Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01001056.1 Corchorus capsularis cultivar CVL-1 contig01056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15444

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
486--688
57
3.6
57
94
0
347
39
27
16
16
1.90
465--683
113
1.9
113
90
2
325
41
26
15
17
1.88
1177--1217
12
3.5
12
83
6
57
60
2
0
36
1.10
3291--3390
41
2.4
41
96
0
182
26
23
15
36
1.93
4416--4666
131
1.9
129
88
3
378
49
2
10
37
1.51
4902--5047
16
9.2
16
81
7
136
8
18
34
39
1.81
4911--5047
32
4.3
32
82
4
170
8
18
35
37
1.82
4908--5045
48
2.9
48
84
1
170
8
18
35
36
1.82
5446--5480
14
2.6
13
90
4
52
20
11
0
68
1.20
5597--5699
16
6.4
16
75
4
64
9
19
38
32
1.84
5736--5767
17
1.9
17
93
6
57
3
15
56
25
1.54
5736--5788
26
2.0
27
89
10
83
5
15
54
24
1.62
9834--9865
16
2.0
16
100
0
64
18
12
37
31
1.88
11394--11433
3
13.7
3
84
5
55
32
0
32
35
1.58
14177--14239
27
2.3
26
81
10
65
41
3
11
44
1.56
14222--14384
75
2.2
77
84
6
217
36
8
15
38
1.79

Tables:   1

The End!