Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010566.1 Corchorus capsularis cultivar CVL-1 contig10587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31551

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--783
318
2.5
315
85
4
984
34
14
14
36
1.87
3643--4014
188
2.0
188
90
1
593
26
15
17
40
1.89
7457--7500
5
8.8
5
97
0
79
77
0
0
22
0.77
13118--14962
331
5.6
331
80
5
1965
35
16
15
32
1.90
13116--14962
665
2.8
661
86
2
2474
35
16
15
32
1.90
15018--15083
27
2.4
28
82
7
82
48
1
6
43
1.36
15046--15105
27
2.1
27
81
6
66
56
5
6
31
1.47
15005--15181
92
1.9
95
88
3
270
53
4
7
34
1.51
15231--15264
14
2.3
15
90
5
52
47
2
17
32
1.63
16107--16131
1
25.0
1
100
0
50
0
0
100
0
0.00
16933--17014
39
2.0
40
93
4
139
42
7
8
41
1.63
23132--23159
6
4.7
6
100
0
56
35
0
17
46
1.49
24336--24363
2
14.0
2
100
0
56
50
50
0
0
1.00

Tables:   1

The End!