Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010569.1 Corchorus capsularis cultivar CVL-1 contig10590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170092

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
959--987
2
15.0
2
92
7
51
48
0
0
51
1.00
19701--19730
5
5.8
5
96
4
51
80
0
16
3
0.85
35159--35218
31
2.0
31
86
3
86
58
5
15
21
1.56
40745--40778
15
2.3
15
89
0
50
41
14
0
44
1.45
50264--50311
25
1.9
25
95
0
87
16
27
6
50
1.69
50889--50921
17
1.9
17
100
0
66
12
36
21
30
1.90
51236--51412
91
1.9
92
80
1
203
25
19
11
42
1.85
56961--57000
20
2.0
20
100
0
80
20
5
30
45
1.72
57088--57115
13
2.2
13
100
0
56
53
14
14
17
1.73
61829--61879
25
2.0
25
100
0
102
31
19
27
21
1.97
68694--68720
7
3.9
7
100
0
54
40
0
59
0
0.98
69963--69994
15
2.1
15
94
0
55
59
15
18
6
1.57
77643--77686
20
2.2
20
88
8
63
18
6
13
61
1.54
83499--83524
2
13.0
2
100
0
52
0
50
0
50
1.00
87618--87656
18
2.2
18
100
0
78
10
20
17
51
1.74
92629--92838
109
1.9
109
97
0
393
42
14
12
30
1.82
104444--104506
2
34.0
2
71
25
50
46
1
1
50
1.20
122667--122703
6
6.2
6
90
0
56
2
16
29
51
1.58
131801--131828
2
14.0
2
100
0
56
50
0
0
50
1.00
157387--157417
15
2.1
15
93
0
53
0
22
3
74
0.96
168573--169707
336
3.4
334
88
2
1601
31
13
16
37
1.88

Tables:   1

The End!