genome.fa.s10570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010570.1 Corchorus capsularis cultivar CVL-1 contig10591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105224

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181--3506	323	7.1	313	73	11	1718	32	13	15	38	1.87
545--3362	332	8.6	325	72	12	1776	32	13	14	38	1.86
545--3506	657	4.5	655	85	4	3740	32	13	15	38	1.86
4235--5694	330	4.5	327	81	5	1524	33	13	15	37	1.87
4235--5666	660	2.2	649	81	6	1677	33	13	15	37	1.87
6340--6373	2	17.0	2	100	0	68	50	0	0	50	1.00
7730--7879	39	3.9	39	83	10	186	15	28	13	43	1.84
7765--7870	36	2.9	32	82	15	104	16	25	15	42	1.87
7730--7873	75	1.9	74	86	6	202	14	27	13	43	1.84
8381--8488	37	3.0	36	89	5	164	44	22	13	19	1.86
10220--10416	31	6.5	29	75	15	145	35	18	19	26	1.95
10224--10389	60	2.8	59	85	9	237	35	19	19	25	1.95
10255--10358	29	3.5	29	74	10	111	34	19	19	26	1.95
10449--10613	31	5.5	30	69	16	117	27	21	18	32	1.96
10446--10609	60	2.7	60	89	0	256	28	20	18	32	1.96
17000--17075	29	2.8	29	90	9	117	53	7	22	15	1.67
35720--35749	16	1.9	16	93	6	53	63	3	0	33	1.11
36382--36426	21	2.1	21	91	0	72	17	35	11	35	1.86
36790--36886	33	2.9	33	82	8	119	14	42	30	12	1.82
37454--37520	31	2.2	31	83	0	80	40	14	11	32	1.83
38285--38398	33	3.5	32	81	11	117	12	42	34	11	1.78
57594--57620	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64053--64088	18	2.0	18	88	0	54	52	0	8	38	1.32
67719--67746	2	14.0	2	100	0	56	50	0	0	50	1.00
72212--72239	1	28.0	1	100	0	56	0	0	0	100	0.00
77695--77759	33	2.0	33	100	0	130	30	21	16	30	1.96
82958--83001	21	2.1	21	83	8	54	56	20	2	20	1.52
93425--93456	6	5.7	6	89	10	50	0	0	12	87	0.54
93422--93456	11	3.4	11	92	7	56	0	0	11	88	0.51
93425--93456	17	1.9	16	93	6	55	0	0	12	87	0.54
95771--95902	68	2.0	64	92	5	219	34	15	15	34	1.89
102142--102177	2	18.0	2	100	0	72	50	0	0	50	1.00
104750--104810	24	2.3	26	78	16	72	37	32	0	29	1.58
104887--104937	26	2.0	26	88	0	75	45	7	15	31	1.75

Tables:   1

The End!