Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010582.1 Corchorus capsularis cultivar CVL-1 contig10603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42170

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20053--20086
16
2.1
16
100
0
68
20
29
0
50
1.49
22279--23182
419
2.2
410
91
4
1449
36
9
18
36
1.82
22279--23182
210
4.3
211
91
3
1437
36
9
18
36
1.82
25595--25621
2
13.5
2
100
0
54
48
0
0
51
1.00
26907--27319
22
19.0
22
70
14
168
37
15
8
38
1.78
26907--27318
44
9.5
44
71
14
203
37
14
8
38
1.78
27065--27166
23
4.5
23
81
1
91
39
14
9
36
1.80
27304--27347
19
2.3
19
96
0
79
25
22
6
45
1.77
27496--27658
22
7.5
22
71
15
99
35
13
9
41
1.78
27542--27784
22
10.9
22
67
20
80
35
16
9
38
1.81
27921--27977
22
2.6
21
70
8
51
40
15
5
38
1.70
28140--28177
19
2.0
20
85
15
53
63
2
5
28
1.30
29987--30050
31
2.1
30
82
8
76
46
3
21
28
1.66
36285--36589
154
2.0
157
91
3
501
53
6
14
25
1.65
36720--36779
31
1.9
31
90
6
95
48
6
20
25
1.73
36660--36948
143
2.0
143
95
0
524
45
8
13
32
1.74
36863--36924
31
2.0
31
93
0
106
45
6
20
27
1.76
37749--37781
15
2.1
16
94
5
59
57
0
0
42
0.98
37985--38030
3
15.3
3
100
0
92
32
0
0
67
0.91
39698--39729
14
2.3
14
94
0
55
50
15
18
15
1.79

Tables:   1

The End!