Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010584.1 Corchorus capsularis cultivar CVL-1 contig10605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101952

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1415--1443
14
2.1
14
100
0
58
31
6
20
41
1.79
19440--19571
25
5.2
25
78
6
131
22
12
26
37
1.90
23299--23335
2
19.0
2
94
5
67
48
0
0
51
1.00
45104--45141
4
9.8
4
91
5
60
0
18
0
81
0.69
59204--59293
45
2.0
46
91
2
146
27
23
16
32
1.96
58836--60123
650
2.0
635
93
3
2204
33
15
16
35
1.90
59853--59943
45
2.0
46
95
2
166
24
23
19
32
1.97
65539--65589
27
2.0
26
88
7
77
27
37
0
35
1.57
73562--73592
2
15.5
2
100
0
62
48
0
0
51
1.00
84944--85013
35
1.9
37
88
5
108
37
20
5
37
1.76
87520--87643
50
2.5
49
89
1
176
25
25
24
25
2.00
94383--94426
3
14.3
3
95
4
79
31
0
0
68
0.90
101912--101944
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!