Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010585.1 Corchorus capsularis cultivar CVL-1 contig10606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15571

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3530--3563
17
1.9
17
88
5
50
5
29
32
32
1.81
12184--12232
20
2.5
20
100
0
98
30
14
10
44
1.78
13399--13496
22
4.5
22
74
2
90
34
11
8
45
1.69
13487--13570
44
1.9
44
83
9
109
35
14
13
36
1.85
13531--13616
45
1.9
45
80
4
102
37
16
12
33
1.87
13642--13696
22
2.5
23
82
8
78
38
12
10
38
1.79
13654--13723
22
3.2
22
87
0
95
38
15
11
34
1.84
13690--13755
32
2.1
32
91
0
105
33
13
13
39
1.84
13864--14121
44
5.8
43
79
8
234
35
15
9
39
1.80
13859--14121
22
11.9
22
75
9
196
34
15
9
39
1.80
14039--14141
22
4.7
22
70
11
68
35
10
11
41
1.76
14132--14179
19
2.5
19
89
3
69
22
16
12
47
1.80
14132--14185
19
2.8
19
86
5
65
22
20
11
46
1.82
14285--14408
22
5.7
22
78
7
119
32
14
11
41
1.81
14260--14450
44
4.4
44
75
7
158
34
14
10
40
1.81
14260--14423
87
1.9
87
80
7
190
33
14
10
41
1.80
14490--14545
22
2.6
21
83
8
69
37
17
5
39
1.73
14490--14555
22
3.0
22
78
10
64
39
18
4
37
1.71
14561--14621
24
2.7
23
78
9
63
36
16
9
37
1.82
14709--14795
22
4.0
21
77
7
93
35
18
10
35
1.85
14694--14800
22
4.8
22
74
12
85
36
17
9
36
1.82
14959--15001
19
2.2
20
84
16
54
62
2
6
27
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15310--15368
31
1.9
31
93
6
102
49
3
16
30
1.63
15425--15468
21
2.1
21
91
0
70
22
31
11
34
1.90

Tables:   1

The End!