Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010586.1 Corchorus capsularis cultivar CVL-1 contig10607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22072

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
223--255
2
16.5
2
100
0
66
51
0
0
48
1.00
2477--2789
21
14.2
21
72
15
152
19
20
5
54
1.64
2495--2549
15
3.8
15
76
9
60
16
23
5
54
1.63
2527--2770
22
11.4
22
75
13
188
18
20
6
55
1.63
2527--2763
42
5.5
43
80
9
236
18
19
6
55
1.64
2628--2705
14
5.7
13
70
10
57
17
20
2
58
1.50
2441--2766
43
7.6
42
74
11
259
18
20
6
54
1.65
3001--3333
55
6.1
55
93
0
560
24
17
7
51
1.70
3962--4310
51
7.0
50
78
4
366
36
14
6
42
1.72
3962--4312
101
3.5
101
87
3
505
36
14
6
42
1.72
7622--7688
28
2.5
27
80
9
75
37
26
14
20
1.92
12138--12306
23
7.3
23
62
24
70
34
6
26
32
1.82
12141--12491
46
7.6
45
92
3
515
33
8
25
32
1.86
12139--12491
92
3.8
91
92
2
573
33
8
25
32
1.86
12208--12328
23
5.3
23
64
25
76
36
9
23
31
1.86
12323--12397
23
3.3
23
63
26
59
36
8
26
29
1.85
12139--12491
138
2.6
137
91
2
573
33
8
25
32
1.86
14749--14794
18
2.5
19
72
13
51
52
6
15
26
1.67
14992--15035
20
2.2
20
87
0
61
43
18
25
13
1.86
20280--20313
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!