Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010589.1 Corchorus capsularis cultivar CVL-1 contig10610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14338
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:5409 original size:9 final size:9

Alignment explanation


    Indices: 5395--5420  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       5385 TTGAAGTTTA

                     
       5395 ATATTTAAT
          1 ATATTTAAT

                     
       5404 ATATTTAAT
          1 ATATTTAAT

                    
       5413 ATATTTAA
          1 ATATTTAA

       5421 ACCACCAAAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (9 bp):   
ATATTTAAT
Done.