Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010592.1 Corchorus capsularis cultivar CVL-1 contig10613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57546

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
154--180
14
1.9
14
100
0
54
59
3
7
29
1.42
168--226
22
2.6
23
91
5
93
55
6
5
32
1.48
8116--8140
6
4.2
6
100
0
50
68
16
16
0
1.22
9206--9249
3
14.7
3
100
0
88
34
0
0
65
0.93
19445--19503
26
2.3
26
100
0
118
32
3
18
45
1.66
28417--28470
9
6.6
9
82
8
55
24
1
20
53
1.55
28402--28441
21
2.0
20
85
5
53
22
0
17
60
1.37
28431--28474
22
2.0
23
82
13
56
31
4
15
47
1.66
38076--38112
3
12.3
3
100
0
74
67
0
0
32
0.91
39948--39972
3
8.3
3
100
0
50
0
32
0
68
0.90
41802--41839
12
3.3
12
92
7
62
89
5
5
0
0.59
41801--41841
22
1.9
21
90
5
64
85
7
7
0
0.75
46610--46645
16
2.1
18
90
10
58
8
11
2
77
1.08
48781--48812
15
2.1
15
94
0
55
37
0
3
59
1.13
51172--51254
24
3.3
24
64
23
62
57
7
8
26
1.54
51358--51625
114
2.4
114
96
0
491
48
2
11
37
1.51
52104--52147
21
2.1
21
87
8
63
36
2
4
56
1.32
54624--54698
31
2.5
31
86
6
100
30
5
28
36
1.79

Tables:   1

The End!