Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010593.1 Corchorus capsularis cultivar CVL-1 contig10614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39246

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5254--5331
16
4.8
16
75
10
70
52
32
7
7
1.58
5254--5332
32
2.5
32
80
0
95
51
32
7
7
1.58
5483--5567
32
2.7
32
83
3
100
42
38
8
10
1.69
5835--5909
37
2.0
37
89
7
116
48
5
10
36
1.61
7921--7950
5
6.0
5
92
0
51
0
56
40
3
1.16
13048--13114
27
2.6
25
72
9
62
25
16
13
44
1.84
13479--13504
12
2.2
12
100
0
52
42
7
26
23
1.81
13658--13719
31
2.0
31
93
0
106
29
19
6
45
1.75
18722--18778
30
1.9
30
88
0
87
47
7
17
28
1.73
21863--21899
19
1.9
19
94
0
65
16
29
13
40
1.86
30305--30410
56
1.9
56
92
0
176
27
17
21
33
1.96
32549--32584
18
2.0
18
88
0
54
55
0
0
44
0.99
33750--33784
13
2.7
13
86
0
52
0
17
0
82
0.66
33751--33789
11
3.5
11
85
0
60
0
15
0
84
0.62
37726--37789
33
1.9
33
90
0
101
23
17
14
45
1.84
37895--37948
2
25.0
2
80
17
56
44
1
7
46
1.42
37895--37948
7
8.3
6
84
13
56
44
1
7
46
1.42
37895--37948
8
6.4
9
80
20
64
44
1
7
46
1.42
37896--37948
17
3.3
16
85
15
74
43
1
7
47
1.42
37895--37948
24
2.2
23
84
15
72
44
1
7
46
1.42

Tables:   1

The End!