Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010595.1 Corchorus capsularis cultivar CVL-1 contig10616, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26804

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10531--10611
32
2.5
32
89
0
126
14
11
37
37
1.82
10755--10800
16
2.9
16
100
0
92
0
13
39
47
1.42
11284--11520
119
2.0
118
95
2
431
43
17
13
25
1.85
11942--12012
6
11.8
6
78
11
65
30
11
4
53
1.55
14067--14096
2
14.5
2
93
6
51
50
3
0
46
1.18
14138--14213
27
2.8
26
80
8
71
39
11
2
46
1.55
18706--18860
62
2.5
62
89
2
231
34
12
8
43
1.73
18768--19381
22
28.7
21
66
16
128
35
15
9
39
1.81
19173--19205
14
2.4
14
90
5
50
42
21
0
36
1.53
19240--19379
44
3.2
43
85
8
167
35
14
9
41
1.78
19486--19591
22
4.8
22
81
2
115
33
16
9
41
1.80
19461--19591
44
3.0
44
73
8
140
32
15
9
41
1.80
19876--19940
30
2.1
31
88
2
96
50
4
16
27
1.65
20244--20303
16
3.8
15
82
6
66
31
5
8
55
1.51
22221--22460
22
10.8
22
75
11
129
38
15
10
35
1.82
22398--22462
23
2.8
24
88
6
98
40
12
7
40
1.71
22481--22625
22
6.6
21
70
10
94
35
13
9
42
1.77
22481--22624
44
3.3
44
80
9
152
35
12
9
42
1.76
22566--22664
22
4.6
21
72
12
67
36
15
11
37
1.83
22915--23054
22
6.4
21
72
14
97
36
19
7
36
1.81
22930--23054
44
2.8
42
78
9
124
37
19
8
34
1.83
23090--23155
22
2.9
22
77
4
60
37
22
7
31
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23258--23295
19
2.0
20
85
15
53
63
2
5
28
1.30
23602--23660
31
1.9
31
86
6
84
50
3
13
32
1.58
23695--23770
2
36.5
2
73
12
55
44
0
11
43
1.41
23692--23739
24
2.0
24
100
0
96
41
0
12
45
1.42
23720--23765
18
2.7
17
87
9
67
47
0
13
39
1.42
23695--23770
24
3.3
23
82
10
84
44
0
11
43
1.41
26061--26112
6
9.2
6
75
12
56
30
19
0
50
1.48
26071--26115
18
2.4
19
92
3
74
33
17
0
48
1.48

Tables:   1

The End!