Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010596.1 Corchorus capsularis cultivar CVL-1 contig10617, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2333
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41


Found at i:1239 original size:14 final size:14

Alignment explanation


    Indices: 1220--1259  Score: 53
    Period size: 14  Copynumber: 2.7  Consensus size: 14

       1210 GCCGGGTTGG

                     *    
       1220 ATTTGGGTTCGGTT
          1 ATTTGGGTTAGGTT

                          
       1234 ATTTGGGTTAGGTT
          1 ATTTGGGTTAGGTT

                        
       1248 AGTTTCGGGTTA
          1 A-TTT-GGGTTA

       1260 AGGAAATTTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14   14  0.61
  15    3  0.13
  16    6  0.26

ACGTcount: A:0.12, C:0.05, G:0.35, T:0.47


Consensus pattern (14 bp):   
ATTTGGGTTAGGTT
Done.