Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010599.1 Corchorus capsularis cultivar CVL-1 contig10620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44800

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
426--525
6
16.2
6
69
20
55
3
20
46
31
1.66
440--478
15
2.5
16
91
4
62
5
15
38
41
1.69
471--525
23
2.4
23
90
0
83
1
21
47
29
1.61
1258--1319
16
3.8
17
87
4
76
6
14
37
41
1.72
4594--4874
92
3.1
92
100
0
562
32
20
15
32
1.93
24764--24814
15
3.6
15
69
15
54
31
9
0
58
1.30
24764--24826
15
4.3
15
70
13
51
34
7
1
55
1.39
27125--27168
19
2.3
19
84
4
52
43
2
6
47
1.42
27613--27650
17
2.3
17
86
4
51
71
2
0
26
1.00
38806--38891
29
2.9
29
82
5
91
29
24
9
37
1.86
38803--38899
29
3.3
29
80
7
90
25
25
8
40
1.83

Tables:   1

The End!