Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010600.1 Corchorus capsularis cultivar CVL-1 contig10621, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12497
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:8378 original size:20 final size:19

Alignment explanation


    Indices: 8347--8404  Score: 64
    Period size: 20  Copynumber: 2.9  Consensus size: 19

       8337 ATTTATTTTT

                               
       8347 TATATATATAATTATATAA
          1 TATATATATAATTATATAA

                           *    
       8366 TATATATTATAATTACATAA
          1 TATATA-TATAATTATATAA

            *                   
       8386 AACTATAGTAT-ATTATATA
          1 TA-TATA-TATAATTATATA

       8405 TATCCAAAAC


Statistics
Matches: 33,  Mismatches: 4, Indels: 3
        0.82            0.10        0.08

Matches are distributed among these distances:
  19    6  0.18
  20   20  0.61
  21    7  0.21

ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45


Consensus pattern (19 bp):   
TATATATATAATTATATAA
Done.