Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010601.1 Corchorus capsularis cultivar CVL-1 contig10622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60957

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2352--2376
12
2.1
12
100
0
50
8
40
8
44
1.63
2648--2727
21
3.8
21
73
5
63
37
8
16
37
1.79
2754--2848
46
2.1
45
82
7
113
42
6
15
35
1.73
2775--3212
22
19.7
22
67
11
124
36
10
15
37
1.82
2982--3121
44
3.2
43
78
6
138
36
12
16
34
1.87
13439--13501
30
2.1
31
93
3
110
61
20
4
12
1.49
16140--16241
29
3.3
31
75
6
109
32
20
11
35
1.89
20368--20403
2
18.0
2
100
0
72
50
0
0
50
1.00
21684--21709
2
13.0
2
100
0
52
50
0
0
50
1.00
30887--30919
2
16.5
2
100
0
66
0
48
0
51
1.00
30919--30953
12
3.0
11
88
12
52
0
28
0
71
0.86
30915--30950
15
2.4
16
90
9
58
0
30
0
69
0.89
42711--42839
61
2.1
61
97
0
240
37
10
16
36
1.82
46611--46641
14
2.2
14
100
0
62
77
0
22
0
0.77
48335--48391
30
1.9
30
92
0
96
19
12
17
50
1.77
49471--49534
32
2.0
33
90
3
103
7
31
14
46
1.72
51944--51995
24
2.2
24
96
0
95
40
7
32
19
1.80
56165--56189
12
2.1
12
100
0
50
0
36
0
64
0.94
57273--57378
24
4.4
24
85
0
113
14
22
42
20
1.88
57321--57390
24
2.9
24
91
0
104
14
20
41
24
1.89
58539--58602
33
1.9
33
96
0
119
21
34
6
37
1.79
58759--58941
76
2.4
77
94
0
314
43
16
6
33
1.74

Tables:   1

The End!