Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010603.1 Corchorus capsularis cultivar CVL-1 contig10624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81184

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
719--765
22
2.1
22
96
0
85
42
4
6
46
1.48
719--761
11
3.9
11
90
0
68
41
4
6
46
1.51
1128--1194
30
2.2
32
81
13
86
49
4
13
32
1.62
1136--1194
29
1.9
31
86
10
86
49
3
15
32
1.61
3530--3564
11
3.2
11
87
0
52
11
2
5
80
1.00
4454--4557
31
3.4
31
70
15
108
36
20
19
24
1.95
4394--4556
60
2.7
60
91
1
247
34
19
19
26
1.95
4584--4687
31
3.5
30
71
16
90
25
18
21
35
1.95
4588--4747
59
2.7
60
88
1
232
28
20
16
35
1.94
5947--5972
13
2.0
13
100
0
52
30
23
7
38
1.83
8365--8541
91
1.9
91
91
0
291
24
18
23
33
1.97
9544--9608
34
2.0
33
87
6
96
61
16
7
13
1.54
9667--9826
85
1.9
85
98
0
311
50
18
8
23
1.73
21187--21477
151
1.9
151
99
0
573
34
12
19
33
1.89
23956--23988
2
16.5
2
100
0
66
48
0
0
51
1.00
28473--28511
2
19.5
2
100
0
78
0
0
48
51
1.00
32005--32090
30
2.9
30
98
0
163
20
29
6
43
1.78
40937--40977
3
13.7
3
100
0
82
34
0
0
65
0.93
40962--41014
27
2.0
27
84
0
70
33
15
7
43
1.74
50456--50515
33
1.9
32
86
10
88
55
6
33
5
1.48
51079--51135
28
2.1
28
90
3
89
24
17
15
42
1.88
51828--51899
28
2.5
28
86
6
90
38
12
25
23
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51919--51962
23
1.9
23
90
0
70
20
9
18
52
1.72
53500--53529
6
5.0
6
100
0
60
16
50
0
33
1.46
54564--54622
30
2.1
28
87
9
84
57
3
32
6
1.41
72847--72918
37
1.9
37
86
10
103
56
12
16
13
1.66
73086--73145
30
2.0
30
93
3
104
53
6
13
26
1.64
74249--74304
21
2.6
22
70
16
55
57
12
1
28
1.46
74962--75020
19
3.0
19
80
9
73
32
16
10
40
1.82
76321--76351
16
1.9
16
93
0
53
64
6
19
9
1.45
77149--77187
2
20.0
2
94
5
71
48
0
0
51
1.00

Tables:   1

The End!