Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010604.1 Corchorus capsularis cultivar CVL-1 contig10625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35897

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81--641
22
25.7
22
69
7
213
36
14
9
39
1.80
388--472
23
3.7
23
84
1
100
37
14
7
41
1.73
349--472
45
2.8
45
80
10
130
37
14
8
38
1.77
791--836
22
2.1
22
95
0
83
34
15
4
45
1.66
847--1014
22
7.6
23
71
18
101
34
12
10
42
1.76
1037--1092
22
2.6
22
80
2
60
37
16
7
39
1.76
1053--1102
22
2.3
22
82
0
64
40
20
8
32
1.81
1108--1166
22
2.7
22
79
10
66
35
16
10
37
1.83
1202--1341
22
6.3
22
76
9
122
38
20
9
32
1.84
1202--1343
68
2.1
66
81
5
160
38
20
9
31
1.84
1681--1757
38
2.1
35
90
7
118
58
11
16
12
1.63
2060--2093
3
11.3
3
93
0
59
67
2
0
29
1.05
8569--8604
17
2.1
18
89
5
56
72
16
11
0
1.12
8774--8821
2
24.5
2
79
12
55
45
2
4
47
1.33
8800--8866
26
2.5
27
76
7
75
49
7
0
43
1.31
8894--8954
31
2.0
31
87
6
88
29
16
4
49
1.66
8900--8972
29
2.5
31
78
13
82
31
15
4
49
1.63
13307--13359
27
2.0
27
85
7
74
39
9
1
49
1.46
22482--22522
13
3.1
13
85
3
55
2
19
0
78
0.87
24378--24412
2
18.0
2
94
5
63
51
0
0
48
1.00
27298--27367
29
2.5
26
78
14
77
17
10
14
58
1.62
30357--30440
36
2.3
36
81
0
96
15
14
34
35
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35400--35438
17
2.3
17
95
0
69
35
23
0
41
1.55

Tables:   1

The End!