Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010605.1 Corchorus capsularis cultivar CVL-1 contig10626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63277

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
223--333
56
2.0
55
91
8
181
45
10
6
37
1.65
677--730
17
3.1
18
78
5
58
35
3
1
59
1.26
3276--3309
16
2.1
16
94
0
59
26
8
5
58
1.51
4165--4224
29
2.1
29
90
6
95
21
10
16
51
1.73
22792--22818
2
13.5
2
100
0
54
48
0
0
51
1.00
24069--24148
29
2.7
30
86
5
101
36
26
22
15
1.93
24066--24163
31
3.3
29
84
7
101
33
27
24
14
1.94
26327--26401
36
2.1
36
94
0
132
25
8
18
48
1.75
27177--27220
20
2.2
20
87
0
61
31
4
31
31
1.78
27828--27954
62
2.0
62
100
0
254
37
17
13
31
1.88
32560--32602
22
2.0
22
90
0
68
39
4
4
51
1.44
36415--36489
31
2.4
30
84
8
98
50
5
14
29
1.65
56071--56111
2
19.5
2
85
9
55
46
4
2
46
1.37
59362--59394
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!