genome.fa.s10607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010607.1 Corchorus capsularis cultivar CVL-1 contig10628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134713

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--80	2	40.0	2	100	0	160	0	50	0	50	1.00
81--127	4	11.8	4	100	0	94	0	76	0	23	0.78
765--798	12	2.9	12	91	4	52	23	8	0	67	1.18
777--808	16	2.0	16	93	0	55	25	9	0	65	1.22
38856--38941	42	2.0	42	90	4	136	34	8	26	30	1.86
41469--41515	23	2.0	23	100	0	94	25	12	17	44	1.84
41473--41528	23	2.4	23	85	5	60	32	10	14	42	1.80
47324--47385	31	2.0	31	87	6	90	30	11	3	54	1.51
47325--47402	31	2.5	31	83	8	86	30	11	5	52	1.59
47497--47530	18	1.9	18	94	5	61	20	17	5	55	1.62
48269--48327	31	1.9	31	85	0	82	47	5	16	30	1.69
48496--48585	37	2.4	36	76	5	99	14	18	12	54	1.71
48643--48699	22	2.6	22	83	5	71	45	14	5	35	1.67
48684--48735	22	2.3	23	74	6	54	46	9	15	28	1.77
48780--49140	44	8.5	42	70	13	109	39	9	16	35	1.81
48847--49165	44	7.4	44	73	12	207	38	9	16	34	1.81
48847--49160	22	14.5	22	72	12	170	38	9	16	35	1.81
49233--49276	23	1.9	23	86	9	63	29	11	18	40	1.85
56285--56313	1	29.0	1	100	0	58	100	0	0	0	0.00
59053--59077	11	2.3	11	100	0	50	0	8	0	92	0.40
66267--66334	31	2.2	32	82	12	88	72	2	8	16	1.22
66285--66322	18	2.1	19	85	5	51	73	5	7	13	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71373--71438	33	2.0	33	84	0	87	22	30	16	30	1.96
71374--71450	33	2.3	33	82	4	84	24	27	15	32	1.95
74163--74203	9	4.6	9	84	9	57	56	2	0	41	1.13
74145--74195	10	5.2	10	77	11	52	58	1	0	39	1.09
74836--75436	22	27.7	21	70	11	279	35	14	9	39	1.79
75103--75206	46	2.3	46	83	9	126	39	12	9	38	1.76
75387--75436	20	2.5	20	93	0	82	28	16	10	46	1.78
75455--75543	38	2.4	37	86	3	124	56	12	16	14	1.68
75665--75728	31	2.1	30	88	5	94	45	4	21	28	1.72
76675--76705	14	2.2	14	100	0	62	16	22	25	35	1.94
77520--77825	152	2.0	153	96	0	560	32	12	13	42	1.81
81959--82038	41	2.0	40	85	11	110	15	11	20	53	1.71
88077--88110	17	2.0	17	88	0	50	11	11	8	67	1.42
88885--89142	131	2.0	131	86	1	365	29	17	15	36	1.91
89268--89527	134	1.9	136	96	1	479	23	25	16	34	1.95
89596--89655	19	3.1	19	76	11	68	68	0	1	30	0.99
92112--92327	21	10.5	21	75	7	183	27	10	26	35	1.89
92112--92326	62	3.5	61	80	2	223	27	10	26	35	1.89
92112--92327	41	5.2	42	75	7	165	27	10	26	35	1.89
97372--97433	32	2.0	31	96	3	115	59	14	9	16	1.60
97372--97443	28	2.4	30	90	9	112	55	15	11	18	1.68
99736--99781	2	23.0	2	100	0	92	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100359--100482	59	2.2	57	89	4	187	16	24	3	55	1.56
102806--102850	21	2.1	22	87	4	65	17	33	8	40	1.81
102924--102973	25	2.0	25	88	3	75	34	20	2	44	1.63
102977--103023	15	3.4	14	77	22	55	55	10	0	34	1.35
106152--106198	24	2.0	24	91	0	76	44	0	34	21	1.52
110569--110593	12	2.1	12	100	0	50	32	8	28	32	1.86
112756--112805	19	2.6	19	84	9	66	46	4	22	28	1.70
118306--118334	6	4.8	6	100	0	58	34	13	0	51	1.42
120165--120202	19	2.0	20	94	5	69	31	10	7	50	1.66
124222--124288	34	2.0	34	93	0	116	14	13	16	55	1.70
125679--125703	2	12.5	2	100	0	50	52	0	0	48	1.00
125926--125968	17	2.6	16	85	7	68	18	18	0	62	1.32
126074--126159	43	2.0	43	95	0	154	23	15	17	44	1.86
128390--128428	21	1.9	20	84	5	51	48	5	0	46	1.24
128770--128824	27	2.0	28	92	3	94	36	21	10	30	1.88
129751--129797	25	2.0	22	88	12	67	55	2	0	42	1.12
130782--130854	37	2.0	37	94	0	128	35	15	13	35	1.87
133855--133895	6	6.7	6	91	2	64	51	0	12	36	1.40
134303--134347	16	2.8	16	75	0	54	44	33	6	15	1.73

Tables:   1

The End!