Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010609.1 Corchorus capsularis cultivar CVL-1 contig10630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71990
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--48 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43 AT AT AT
1 AT AT AT
49 CAAGAGGTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4730 original size:83 final size:86
Alignment explanation
Indices: 4605--4769 Score: 255
Period size: 83 Copynumber: 2.0 Consensus size: 86
4595 TAAAAATATA
* *
4605 AAGGCACGAGATCAAAGAGTGGATTCACCATTAAAATCGTAATCTCCAATTGGCAACTTTTAACC
1 AAGGCACGAGATCAAAGAGTGGATACACCATTAAAATCGTAATCTCCAATTGACAACTTTTAACC
*
4670 AAATTATAGTTAGGAAACATT
66 AAATTATAGTTAAGAAACATT
* * *
4691 AAGGCACGAGATC-AAG-G-GGATACACCATTAAAATTGTAATCTCCAGTTGACCACTTTTAACC
1 AAGGCACGAGATCAAAGAGTGGATACACCATTAAAATCGTAATCTCCAATTGACAACTTTTAACC
4753 AAATTATAGTTAAGAAA
66 AAATTATAGTTAAGAAA
4770 TCCATACATT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
83 56 0.77
84 1 0.01
85 3 0.04
86 13 0.18
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (86 bp):
AAGGCACGAGATCAAAGAGTGGATACACCATTAAAATCGTAATCTCCAATTGACAACTTTTAACC
AAATTATAGTTAAGAAACATT
Found at i:5045 original size:14 final size:14
Alignment explanation
Indices: 5026--5052 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5016 AGCTTATAAA
5026 CCCCCCCCCGCCCC
1 CCCCCCCCCGCCCC
5040 CCCCCCCCCGCCC
1 CCCCCCCCCGCCC
5053 TACCCCAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.93, G:0.07, T:0.00
Consensus pattern (14 bp):
CCCCCCCCCGCCCC
Found at i:7325 original size:32 final size:32
Alignment explanation
Indices: 7275--7336 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
7265 GAGTTTATGA
*
7275 ATTCCATATACCTAGAAACAGACGCCACAAGG
1 ATTCCATACACCTAGAAACAGACGCCACAAGG
*
7307 ATTCGATACACCTAGAAACAGACGCCACAA
1 ATTCCATACACCTAGAAACAGACGCCACAA
7337 TCCTCCTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.42, C:0.29, G:0.15, T:0.15
Consensus pattern (32 bp):
ATTCCATACACCTAGAAACAGACGCCACAAGG
Found at i:12310 original size:7 final size:7
Alignment explanation
Indices: 12298--12327 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
12288 CATCTCCATT
12298 ACTTCAA
1 ACTTCAA
12305 ACTTCAA
1 ACTTCAA
12312 ACTTCAA
1 ACTTCAA
12319 ACTTCAA
1 ACTTCAA
12326 AC
1 AC
12328 ACTGCTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.27
Consensus pattern (7 bp):
ACTTCAA
Found at i:16136 original size:28 final size:28
Alignment explanation
Indices: 16104--16159 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
16094 TTGTCGGTAT
* *
16104 AAACTCAAGTTCATTTTGATGCCAAAAA
1 AAACTCAAGTACATTTTGATCCCAAAAA
*
16132 AAACTCGAGTACATTTTGATCCCAAAAA
1 AAACTCAAGTACATTTTGATCCCAAAAA
16160 GAAAGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.27
Consensus pattern (28 bp):
AAACTCAAGTACATTTTGATCCCAAAAA
Found at i:16307 original size:20 final size:20
Alignment explanation
Indices: 16282--16340 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
16272 ATGTAACGGG
16282 ATATCCGTCGATATATCCGT
1 ATATCCGTCGATATATCCGT
16302 ATATCCGTCGATATTTAT-CG-
1 ATATCCGTCGATA--TATCCGT
16322 ATAT-C-TCGATATATCCGT
1 ATATCCGTCGATATATCCGT
16340 A
1 A
16341 AATATCCGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
16 3 0.09
17 2 0.06
18 7 0.20
19 1 0.03
20 17 0.49
21 2 0.06
22 3 0.09
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (20 bp):
ATATCCGTCGATATATCCGT
Found at i:16345 original size:10 final size:10
Alignment explanation
Indices: 16332--16357 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16322 ATATCTCGAT
16332 ATATCCGTAA
1 ATATCCGTAA
16342 ATATCCGTAA
1 ATATCCGTAA
16352 ATATCC
1 ATATCC
16358 ATATTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (10 bp):
ATATCCGTAA
Found at i:16702 original size:3 final size:3
Alignment explanation
Indices: 16690--16728 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
16680 GCTCACGGAA
16690 GAT G-T GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
16729 GGGGAAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:17834 original size:13 final size:12
Alignment explanation
Indices: 17804--17846 Score: 77
Period size: 12 Copynumber: 3.5 Consensus size: 12
17794 CATCGATACC
17804 TCGATATATCCG
1 TCGATATATCCG
17816 TCGATATATCCG
1 TCGATATATCCG
17828 TTCGATATATCCG
1 -TCGATATATCCG
17841 TCGATA
1 TCGATA
17847 CCTGTATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 18 0.60
13 12 0.40
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (12 bp):
TCGATATATCCG
Found at i:18297 original size:220 final size:219
Alignment explanation
Indices: 17915--18345 Score: 711
Period size: 220 Copynumber: 2.0 Consensus size: 219
17905 ATTATACAAA
17915 ATACAAAACAATAAAAGGAGGATATGAAAGTACCAAAAAACCAAACCAACCAACTCTTCTCATGA
1 ATACAAAACAATAAAAGGAGGATATGAAAGTACCAAAAAACCAAACCAACCAACTCTTCTCATGA
* * **
17980 CTTGAAGAATAAATGGGGAGGGGTATTTTGATACTTTCATGCTCGGTTTTTTTGTTATTTGGATT
66 CTTGAAGAATAAATGGAGAGGGGTATTTTGATACTTTCATGCTCGATTTTTTCATTATTTGGATT
*
18045 GATGATTGAAAGTATTTTGAAAATTTTGTGAAAAAGTTACTATTTT-TGTGGGACCTATTCTCCA
131 GATGATTGAAAGTATTTTGAAAACTTTGTGAAAAAGTTACTATTTTGTG-GGGACC-ATTCTCCA
*
18109 GGAACTAATACTTTTATTGGATTAAT
194 GAAACTAATACTTTTATTGGATTAAT
*
18135 ATACAAAACAATAAAAGGAGGATATGAAAGTACCAAAAAACCAACCCAACCAACTCTTCTCATGA
1 ATACAAAACAATAAAAGGAGGATATGAAAGTACCAAAAAACCAAACCAACCAACTCTTCTCATGA
*
18200 CTTGAAGAATAAATGGAGAGGGGTATTTTGGTACTTTCATGCTCGATTTTTTCATTATTTGGATT
66 CTTGAAGAATAAATGGAGAGGGGTATTTTGATACTTTCATGCTCGATTTTTTCATTATTTGGATT
** ** * *
18265 GATGATTGAGGGTATTTTGGGAACTTTGTGAAAAAGTTACTATTTTGTGGGGTCCATTCTCCATA
131 GATGATTGAAAGTATTTTGAAAACTTTGTGAAAAAGTTACTATTTTGTGGGGACCATTCTCCAGA
18330 AACTAATACTTTTATT
196 AACTAATACTTTTATT
18346 AGATCATTTA
Statistics
Matches: 196, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
219 24 0.12
220 170 0.87
221 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (219 bp):
ATACAAAACAATAAAAGGAGGATATGAAAGTACCAAAAAACCAAACCAACCAACTCTTCTCATGA
CTTGAAGAATAAATGGAGAGGGGTATTTTGATACTTTCATGCTCGATTTTTTCATTATTTGGATT
GATGATTGAAAGTATTTTGAAAACTTTGTGAAAAAGTTACTATTTTGTGGGGACCATTCTCCAGA
AACTAATACTTTTATTGGATTAAT
Found at i:19149 original size:437 final size:438
Alignment explanation
Indices: 18435--19224 Score: 1047
Period size: 438 Copynumber: 1.8 Consensus size: 438
18425 CGCGTTGACT
* * * *
18435 TTTATTTTTGTATTTTTTTTTCTATTTTTCCGATTAAGGTGATTCAAGCGTCTATTAAGAGATAA
1 TTTATTTTTGTATTCTTTGTTCTATTTGTCCGATTAAGGTGATTCAAGCGTCTATTAAAAGATAA
* ** * *
18500 TTTCATGATCTACAATTTTCATTAAGAACTCAAAAACCAATTTTAATGTGTTGATTCTAAAAAAT
66 TTTCATGATCTACAACTTTCAGGAAGAACTCAAAAACCAATTTTAATGTGTTAATTCAAAAAAAT
* * * * * *
18565 GGTTCCGAAATTTTGTGGTTTTGATTGCCGGTTAATTTAATATCGTATAATTTTTTGTCCACATG
131 GGTTCCGAAATTTTGTGGTTTCGATTGCCGGTTAATTCAATACCATATAATCTTTCGTCCACATG
* * * * * *
18630 TCCGATTGAAGTTATTGAAGTGTCGATTAAAAGGTTATTGCATGATTTACGACTTTCATAAAGGA
196 TCCAATTAAAGTTATTCAAGTGTCGATTAAAAGGTTACTGCATGATCTACGACTTTCATAAAGAA
* *
18695 CCCGAAAGCTAAATTTGATATACGAGTTTCGTTAAGGGTT-AAAAGAGAATTTTTATGTTTCAAG
261 CCCGAAAGCTAAATTTGATATACGAGTTTCATGAAGGGTTCAAAAGAGAATTTTTATGTTTCAAG
18759 ATCTCCATTAACAAAC-ATTTTCTTATTTGGATTATTTATCAAATGACCCTCATACTTTTCTACA
326 ATCTCCATTAAC-AACTATTTTCTTATTTGGATTATTTATCAAATGACCCTCATACTTTTCTACA
18823 TTATACTACTTAGTCCTTTACAAATTCTATCTTAATCTGACGTTTAAGC
390 TTATACTACTTAGTCCTTTACAAATTCTATCTTAATCTGACGTTTAAGC
* * * * *
18872 TTTATTTTTTTATTCTTTGTTCTATTTGTCCGATTAAGTTGATTCATGTGTCTATTAAAAGGTAA
1 TTTATTTTTGTATTCTTTGTTCTATTTGTCCGATTAAGGTGATTCAAGCGTCTATTAAAAGATAA
* * ** *
18937 TTTCATGATTTACAACTTTCAGGAAGGACTC-AAAAGTAATTTTTTATGT-TTCAATTCAAAAAA
66 TTTCATGATCTACAACTTTCAGGAAGAACTCAAAAACCAA-TTTTAATGTGTT-AATTCAAAAAA
* * * **
19000 ATTGTTTCCTAAA-TTTGATTGTTTCGATTGTTGGTCT-ATTCAATACCATATAA-CTTTCGATC
129 A-TGGTTCCGAAATTTTG-TGGTTTCGATTGCCGGT-TAATTCAATACCATATAATCTTTCG-TC
* * * *
19062 CACATGTCCAATTAAAGTTATTCAAGTGTCGGTTAAAAGGTTACTGTATGGTCTACTACTTTCAT
190 CACATGTCCAATTAAAGTTATTCAAGTGTCGATTAAAAGGTTACTGCATGATCTACGACTTTCAT
* * * *
19127 GAAGAACCCGAAAG-TTAATTTGATCTACGAGTTTCATGGAGGGTTCAAAAGAGAATTTTTATGT
255 AAAGAACCCGAAAGCTAAATTTGATATACGAGTTTCATGAAGGGTTCAAAAGAGAATTTTTATGT
19191 TTCAAGATCTCCATTAACAACTATTTTCTTATTT
320 TTCAAGATCTCCATTAACAACTATTTTCTTATTT
19225 TTTTTACTCG
Statistics
Matches: 299, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
436 8 0.03
437 137 0.46
438 153 0.51
439 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (438 bp):
TTTATTTTTGTATTCTTTGTTCTATTTGTCCGATTAAGGTGATTCAAGCGTCTATTAAAAGATAA
TTTCATGATCTACAACTTTCAGGAAGAACTCAAAAACCAATTTTAATGTGTTAATTCAAAAAAAT
GGTTCCGAAATTTTGTGGTTTCGATTGCCGGTTAATTCAATACCATATAATCTTTCGTCCACATG
TCCAATTAAAGTTATTCAAGTGTCGATTAAAAGGTTACTGCATGATCTACGACTTTCATAAAGAA
CCCGAAAGCTAAATTTGATATACGAGTTTCATGAAGGGTTCAAAAGAGAATTTTTATGTTTCAAG
ATCTCCATTAACAACTATTTTCTTATTTGGATTATTTATCAAATGACCCTCATACTTTTCTACAT
TATACTACTTAGTCCTTTACAAATTCTATCTTAATCTGACGTTTAAGC
Found at i:23436 original size:2 final size:2
Alignment explanation
Indices: 23429--23461 Score: 57
Period size: 2 Copynumber: 16.0 Consensus size: 2
23419 ACCCAACGTG
23429 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
23462 GTGTCTTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 28 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23621 original size:41 final size:41
Alignment explanation
Indices: 23562--23745 Score: 142
Period size: 41 Copynumber: 4.4 Consensus size: 41
23552 CTTGTGTTAC
* *
23562 ATGTGTTT-AGGGATTTTGATATAGATGCCTCTGTGTTAAGA
1 ATGTGTTTGA-GGACTTTGATAGAGATGCCTCTGTGTTAAGA
* *
23603 ATGTGCTTGAGGACTTTGAGAGAGAGTTG-CTCCTGTGTTATA-A
1 ATGTGTTTGAGGACTTTGATAGAGA--TGCCT-CTGTGTTA-AGA
* * * * *
23646 TTGTGTTTGGGGACTTTGATATG-GATGCTTTTGTGTTATGA
1 ATGTGTTTGAGGACTTTGATA-GAGATGCCTCTGTGTTAAGA
* * * * *
23687 ATGTGTTTGAGGACTTTAAAAGAGTTGCCCCTGTGTTATGA
1 ATGTGTTTGAGGACTTTGATAGAGATGCCTCTGTGTTAAGA
* *
23728 TTGTGTTTGGGGACTTTG
1 ATGTGTTTGAGGACTTTG
23746 GTTATTGGGT
Statistics
Matches: 112, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.01
41 75 0.67
42 4 0.04
43 30 0.27
44 2 0.02
ACGTcount: A:0.20, C:0.09, G:0.30, T:0.41
Consensus pattern (41 bp):
ATGTGTTTGAGGACTTTGATAGAGATGCCTCTGTGTTAAGA
Found at i:23653 original size:84 final size:82
Alignment explanation
Indices: 23547--23745 Score: 258
Period size: 82 Copynumber: 2.4 Consensus size: 82
23537 GTAGAGAAAA
* * * *
23547 TTGCCCTTGTGTTA-CA-TGTGTTTAGGGATTTTGATATAGATGCCTCTGTGTTAAGAATGTGCT
1 TTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTAAGAATGTGCT
*
23610 TGAGGACTTTGAGAGAGAG
66 TGAGGACTTT-A-AAAGAG
* * * * * *
23629 TTGCTCCTGTGTTATAATTGTGTTTGGGGACTTTGATATGGATGCTTTTGTGTTATGAATGTGTT
1 TTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTAAGAATGTGCT
23694 TGAGGACTTTAAAAGAG
66 TGAGGACTTTAAAAGAG
*
23711 TTGCCCCTGTGTTATGATTGTGTTTGGGGACTTTG
1 TTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTG
23746 GTTATTGGGT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
82 50 0.49
83 2 0.02
84 50 0.49
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (82 bp):
TTGCCCCTGTGTTATAATTGTGTTTGGGGACTTTGATATAGATGCCTCTGTGTTAAGAATGTGCT
TGAGGACTTTAAAAGAG
Found at i:43203 original size:35 final size:35
Alignment explanation
Indices: 43160--43641 Score: 509
Period size: 35 Copynumber: 13.8 Consensus size: 35
43150 ATTACCCTTT
* *
43160 CTTAATTACCCTGAATTAAGTTACTTATTGACTTG
1 CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
* * * *
43195 CTTGATTACCCTGAATCAAGTTGCTAACTGACTTA
1 CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
*
43230 CTTAATTACCCTGAATTAAGCTACTTACTG----A
1 CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
* * * *
43261 CTTAATTACCCTGGATTAAGTTACCT-GTTACTTA
1 CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
* *
43295 CTTAATTACCCTGAATTAAGTTGA-TTACTAAATTA
1 CTTAATTACCCTGAATTAAGTT-ACTTACTGACTTA
* * * *
43330 CTTAATTACCCTGAATTAAATTAATAACTGGA-TTT
1 CTTAATTACCCTGAATTAAGTTACTTACT-GACTTA
*
43365 CTTAATTACCCTGAATTAAGTTACTGCTTACTAACTTA
1 CTTAATTACCCTGAATTAAGTTA---CTTACTGACTTA
* * * *
43403 CTTAATTACCCTGAATTAAGTTTCTTATTAACTCA
1 CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
*
43438 CTTAATTACCCTGAATTAAATTA-TTCACTGACTTA
1 CTTAATTACCCTGAATTAAGTTACTT-ACTGACTTA
* *
43473 CTTAACTACCCTGAATTAAATTA-TTCACTGACTTA
1 CTTAATTACCCTGAATTAAGTTACTT-ACTGACTTA
* * * *
43508 CATAATTATCCTGAATTAAGTTACTTATTAACTTA
1 CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
*
43543 CTTAATTTACCCTGAATTAAGTTA-TTCACTGACCTA
1 CTTAA-TTACCCTGAATTAAGTTACTT-ACTGACTTA
*
43579 CTTAATTTACCCTGAATTAAGTTA-TTCACTGACCTA
1 CTTAA-TTACCCTGAATTAAGTTACTT-ACTGACTTA
43615 CTTAATTACCCTGAATTAAGTTACTTA
1 CTTAATTACCCTGAATTAAGTTACTTA
43642 TTACTGATTT
Statistics
Matches: 380, Mismatches: 50, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
30 1 0.00
31 24 0.06
34 26 0.07
35 231 0.61
36 69 0.18
37 1 0.00
38 28 0.07
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.40
Consensus pattern (35 bp):
CTTAATTACCCTGAATTAAGTTACTTACTGACTTA
Found at i:43446 original size:108 final size:106
Alignment explanation
Indices: 43160--43644 Score: 546
Period size: 108 Copynumber: 4.6 Consensus size: 106
43150 ATTACCCTTT
* * * * * * *
43160 CTTAATTACCCTGAATTAAGTTA-CTTATTGACTTGCTTGATTACCCTGAATCAAGTTGCTAACT
1 CTTAATTACCCTGAATTAAGTTATCTTACTGACTTACTTAATTACCCTGAATTAAGTTACTTATT
* **
43224 GACTTACTTAATTACCCTGAATTAAGCTACTT-ACTG----A
66 AACTTACTTAATTACCCTGAATTAAATTA-TTCACTGACTTA
* *
43261 CTTAATTACCCTGGATTAAGTTACCTGT--T-ACTTACTTAATTACCCTGAATTAAGTTGA-TTA
1 CTTAATTACCCTGAATTAAGTTATCT-TACTGACTTACTTAATTACCCTGAATTAAGTT-ACTTA
* * * * *
43322 CTAAATTACTTAATTACCCTGAATTAAATTAATAACTGGA-TTT
64 TTAACTTACTTAATTACCCTGAATTAAATTATTCACT-GACTTA
* *
43365 CTTAATTACCCTGAATTAAGTTACTGCTTACTAACTTACTTAATTACCCTGAATTAAGTTTCTTA
1 CTTAATTACCCTGAATTAAGTTA-T-CTTACTGACTTACTTAATTACCCTGAATTAAGTTACTTA
*
43430 TTAACTCACTTAATTACCCTGAATTAAATTATTCACTGACTTA
64 TTAACTTACTTAATTACCCTGAATTAAATTATTCACTGACTTA
* * * * *
43473 CTTAACTACCCTGAATTAAATTAT-TCACTGACTTACATAATTATCCTGAATTAAGTTACTTATT
1 CTTAATTACCCTGAATTAAGTTATCTTACTGACTTACTTAATTACCCTGAATTAAGTTACTTATT
* *
43537 AACTTACTTAATTTACCCTGAATTAAGTTATTCACTGACCTA
66 AACTTACTTAA-TTACCCTGAATTAAATTATTCACTGACTTA
* *
43579 CTTAATTTACCCTGAATTAAGTTAT-TCACTGACCTACTTAATTACCCTGAATTAAGTTACTTAT
1 CTTAA-TTACCCTGAATTAAGTTATCTTACTGACTTACTTAATTACCCTGAATTAAGTTACTTAT
43643 TA
65 TA
43645 CTGATTTACC
Statistics
Matches: 331, Mismatches: 36, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
99 1 0.00
100 56 0.17
101 24 0.07
102 2 0.01
103 1 0.00
104 22 0.07
105 46 0.14
106 35 0.11
107 59 0.18
108 85 0.26
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.40
Consensus pattern (106 bp):
CTTAATTACCCTGAATTAAGTTATCTTACTGACTTACTTAATTACCCTGAATTAAGTTACTTATT
AACTTACTTAATTACCCTGAATTAAATTATTCACTGACTTA
Found at i:44184 original size:49 final size:52
Alignment explanation
Indices: 44131--44238 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 52
44121 AAAAATCTCA
* *
44131 TTTTTACTCCAAACTTTACCAAGAT-TCATTTTTT-CT-AACTAAAGATAAT
1 TTTTTACTCAAAACTTTACCAAGATCTAATTTTTTACTAAACTAAAGATAAT
* * *
44180 TTTTTATTTAAAACTTTACCAAGATCTAATTTTTTAACTAAACTAAAGATCAT
1 TTTTTACTCAAAACTTTACCAAGATCTAATTTTTT-ACTAAACTAAAGATAAT
*
44233 ATTTTA
1 TTTTTA
44239 TTTAAAAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 22 0.45
50 8 0.16
52 2 0.04
53 17 0.35
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.44
Consensus pattern (52 bp):
TTTTTACTCAAAACTTTACCAAGATCTAATTTTTTACTAAACTAAAGATAAT
Found at i:44243 original size:53 final size:49
Alignment explanation
Indices: 44141--44245 Score: 147
Period size: 53 Copynumber: 2.1 Consensus size: 49
44131 TTTTTACTCC
* *
44141 AAACTTTACCAAGATTCATTTTTTCTAACTAAAGATAATTTTTTATTTA
1 AAACTTTACCAAGATTAATTTTTTCTAACTAAAGATAATATTTTATTTA
*
44190 AAACTTTACCAAGATCTAATTTTTTAACTAAACTAAAGATCATATTTTATTTA
1 AAACTTTACCAAGAT-TAATTTTTT--CT-AACTAAAGATAATATTTTATTTA
44243 AAA
1 AAA
44246 AATTAAATTG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
49 15 0.31
50 8 0.16
52 2 0.04
53 24 0.49
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (49 bp):
AAACTTTACCAAGATTAATTTTTTCTAACTAAAGATAATATTTTATTTA
Found at i:46807 original size:37 final size:36
Alignment explanation
Indices: 46764--46849 Score: 93
Period size: 37 Copynumber: 2.4 Consensus size: 36
46754 ACTTTAAACG
* *
46764 AAGACCACCCTGGATCATTTCGA-ACTGAACTAAAAA
1 AAGACCACCCTGGATCATTCCGACA-TAAACTAAAAA
* * * *
46800 AACGACCACCTTTGATCGTTCCGACATAAACTAAAGA
1 AA-GACCACCCTGGATCATTCCGACATAAACTAAAAA
46837 AAGACCACCCTGG
1 AAGACCACCCTGG
46850 GTCAGCTAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
36 11 0.28
37 28 0.70
38 1 0.03
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.19
Consensus pattern (36 bp):
AAGACCACCCTGGATCATTCCGACATAAACTAAAAA
Found at i:46908 original size:36 final size:35
Alignment explanation
Indices: 46861--46954 Score: 116
Period size: 36 Copynumber: 2.6 Consensus size: 35
46851 TCAGCTAAAA
* **
46861 TAAATTGAAGAACGTCCACCCTCAATCATCCCGGAC
1 TAAACTGAAGAACAACCACCCTCAATCATCCC-GAC
* *
46897 TAAACTGAAGAACAACCACCCTCGATCATTCCGAC
1 TAAACTGAAGAACAACCACCCTCAATCATCCCGAC
*
46932 TCAAACTGAAGAAAAACCACCCT
1 T-AAACTGAAGAACAACCACCCT
46955 GAGTCATTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
35 4 0.08
36 47 0.92
ACGTcount: A:0.38, C:0.33, G:0.12, T:0.17
Consensus pattern (35 bp):
TAAACTGAAGAACAACCACCCTCAATCATCCCGAC
Found at i:46982 original size:8 final size:8
Alignment explanation
Indices: 46969--47010 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
46959 CATTGAAGTA
46969 AATTGAAG
1 AATTGAAG
*
46977 AATTGAAT
1 AATTGAAG
*
46985 CATTG-AG
1 AATTGAAG
46992 TAATTGAAG
1 -AATTGAAG
47001 AATTGAAG
1 AATTGAAG
47009 AA
1 AA
47011 AGACCACCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 1 0.04
8 25 0.89
9 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.21, T:0.29
Consensus pattern (8 bp):
AATTGAAG
Found at i:46999 original size:24 final size:26
Alignment explanation
Indices: 46958--47007 Score: 86
Period size: 24 Copynumber: 2.0 Consensus size: 26
46948 CCACCCTGAG
46958 TCATTGAAGTAAATTGAAGAATTGAA
1 TCATTGAAGTAAATTGAAGAATTGAA
46984 TCATTG-AGT-AATTGAAGAATTGAA
1 TCATTGAAGTAAATTGAAGAATTGAA
47008 GAAAGACCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 15 0.62
25 3 0.12
26 6 0.25
ACGTcount: A:0.44, C:0.04, G:0.20, T:0.32
Consensus pattern (26 bp):
TCATTGAAGTAAATTGAAGAATTGAA
Found at i:47258 original size:29 final size:29
Alignment explanation
Indices: 47226--47284 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
47216 TTGGGTCATG
* *
47226 TAACTGAGGAAAGATCACCCTGGATCGAT
1 TAACTGAAGAAAGACCACCCTGGATCGAT
** *
47255 TAACTGAAGATGGACCACCCTGGGTCGAT
1 TAACTGAAGAAAGACCACCCTGGATCGAT
47284 T
1 T
47285 GAAAATCACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (29 bp):
TAACTGAAGAAAGACCACCCTGGATCGAT
Found at i:47415 original size:35 final size:34
Alignment explanation
Indices: 47329--47424 Score: 115
Period size: 34 Copynumber: 2.8 Consensus size: 34
47319 TTTGAAAGCA
* *
47329 ACTGAAGAAAGACCGCCCTGAGTTAATTGAAATT
1 ACTGAAGAGAGACCGCCCTGAGTCAATTGAAATT
*
47363 ATTGAAGAGAGACCGCCCT-AGATCAATTGAAATTT
1 ACTGAAGAGAGACCGCCCTGAG-TCAATTGAAA-TT
*
47398 ACTGAATG-GAGACCGCCCTGGGTCAAT
1 ACTGAA-GAGAGACCGCCCTGAGTCAAT
47425 GAACTGAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
33 2 0.04
34 26 0.49
35 23 0.43
36 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (34 bp):
ACTGAAGAGAGACCGCCCTGAGTCAATTGAAATT
Found at i:48404 original size:20 final size:18
Alignment explanation
Indices: 48381--48417 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
48371 TAGGGCTTCT
48381 TTTTTCTTCTTCTTTTTTTC
1 TTTTTC-TC-TCTTTTTTTC
48401 TTTTTCTCTCTTTTTTT
1 TTTTTCTCTCTTTTTTT
48418 ATGCACTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTCTCTTTTTTTC
Found at i:48711 original size:18 final size:17
Alignment explanation
Indices: 48690--48724 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
48680 CTTTGCTCCA
48690 TCTTATACCTTCTTTTTT
1 TCTT-TACCTTCTTTTTT
*
48708 TCTTTACTTTCTTTTTT
1 TCTTTACCTTCTTTTTT
48725 CAATTTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (17 bp):
TCTTTACCTTCTTTTTT
Found at i:48742 original size:6 final size:6
Alignment explanation
Indices: 48721--48774 Score: 72
Period size: 6 Copynumber: 8.7 Consensus size: 6
48711 TTACTTTCTT
* *
48721 TTTTCAA TTTTCA TTTTTA TTTTCA CTTTCA TTTTTCA TTTTCA TTTTCA
1 TTTTC-A TTTTCA TTTTCA TTTTCA TTTTCA -TTTTCA TTTTCA TTTTCA
48771 TTTT
1 TTTT
48775 TTTTCCGCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
6 32 0.76
7 10 0.24
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTCA
Found at i:48743 original size:19 final size:19
Alignment explanation
Indices: 48721--48775 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
48711 TTACTTTCTT
48721 TTTTCAATTTTCATTTTT-A
1 TTTTC-ATTTTCATTTTTCA
*
48740 TTTTCACTTTCATTTTTCA
1 TTTTCATTTTCATTTTTCA
48759 TTTTCATTTTCATTTTT
1 TTTTCATTTTCATTTTT
48776 TTTCCGCTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.16, C:0.15, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTCATTTTCATTTTTCA
Found at i:48750 original size:25 final size:25
Alignment explanation
Indices: 48722--48770 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
48712 TACTTTCTTT
*
48722 TTTCAATTTTCATTTTTATTTTCAC
1 TTTCAATTTTCATTTTCATTTTCAC
*
48747 TTTCATTTTTCATTTTCATTTTCA
1 TTTCAATTTTCATTTTCATTTTCA
48771 TTTTTTTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTCAATTTTCATTTTCATTTTCAC
Found at i:49133 original size:16 final size:15
Alignment explanation
Indices: 49112--49145 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
49102 TTCAAAACCA
*
49112 TTTTTGAGAAATCATT
1 TTTTTGAAAAATC-TT
49128 TTTTTGAAAAATCTT
1 TTTTTGAAAAATCTT
49143 TTT
1 TTT
49146 AAAATGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.29, C:0.06, G:0.09, T:0.56
Consensus pattern (15 bp):
TTTTTGAAAAATCTT
Found at i:49487 original size:2 final size:2
Alignment explanation
Indices: 49480--49504 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
49470 GAACAGCAGA
49480 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
49505 CAAAAAGCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:53768 original size:14 final size:14
Alignment explanation
Indices: 53749--53775 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
53739 TTCTTACTAA
53749 ACTTAATTACCCTT
1 ACTTAATTACCCTT
53763 ACTTAATTACCCT
1 ACTTAATTACCCT
53776 GAATTAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (14 bp):
ACTTAATTACCCTT
Found at i:53807 original size:35 final size:35
Alignment explanation
Indices: 53760--54281 Score: 530
Period size: 35 Copynumber: 14.9 Consensus size: 35
53750 CTTAATTACC
*
53760 CTTACTTAATTACCCTGAATTAAGTTACTTATTGA
1 CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
* * * * * *
53795 CTTGCTTGATTACCCTGAATCACGTTGCTAACTGA
1 CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
* *
53830 CTTACTTAATTACCCTGAACTAAGCTA-TT--T-A
1 CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
* * * * *
53861 CTGACTTAATTACCCTGGATTAAGTTACCT-GTTA
1 CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
* *
53895 CTTACTTAATCACCCTGAATTAAGTTGA-TTACTAA
1 CTTACTTAATTACCCTGAATTAAGTT-ACTTACTGA
* * * *
53930 ATTACTTAATTACCCTGAATTAAATTAATAACTGGA
1 CTTACTTAATTACCCTGAATTAAGTTACTTACT-GA
* *
53966 -TTTCTTAATTACCCTGAATTAAGTTATTGACTTACTAA
1 CTTACTTAATTACCCTGAATTAAG---TT-ACTTACTGA
54004 CTTACTTAATTACCCTGAATTAAGTTA-TTCACTGA
1 CTTACTTAATTACCCTGAATTAAGTTACTT-ACTGA
* * *
54039 CTTGCTTAATTACCCTGAATTAAGTTTCTTA-TTA
1 CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
* *
54073 TCTCACTTAATTACCCTGAATTAAATTA-TTCACTGA
1 -CTTACTTAATTACCCTGAATTAAGTTACTT-ACTGA
* * *
54109 CTCACTTAACTACCCTGAATTAAATTA-TTCACTGA
1 CTTACTTAATTACCCTGAATTAAGTTACTT-ACTGA
*
54144 CTTACTTAATTACCCTGAATTAAGTTACTTATTGA
1 CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
54179 CTTACTTAATTTACCCTGAATTAAGTTA-TTCACTGA
1 CTTACTTAA-TTACCCTGAATTAAGTTACTT-ACTGA
*
54215 CCTACTTAATTTACCCTGAATTAAGTTA-TTCACTGA
1 CTTACTTAA-TTACCCTGAATTAAGTTACTT-ACTGA
*
54251 CCTACTTAATTACCCTGAATTAAGTTACTTA
1 CTTACTTAATTACCCTGAATTAAGTTACTTA
54282 TTACTGATTC
Statistics
Matches: 413, Mismatches: 53, Indels: 42
0.81 0.10 0.08
Matches are distributed among these distances:
31 24 0.06
32 2 0.00
33 1 0.00
34 33 0.08
35 246 0.60
36 77 0.19
38 3 0.01
39 27 0.07
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (35 bp):
CTTACTTAATTACCCTGAATTAAGTTACTTACTGA
Found at i:54081 original size:144 final size:138
Alignment explanation
Indices: 53760--54277 Score: 514
Period size: 144 Copynumber: 3.7 Consensus size: 138
53750 CTTAATTACC
* * * * * ** ** *
53760 CTTACTTAATTACCCTGAATTAAGTTACTTATTGACTTGCTTGATTACCCTGAATCACGTTGCTA
1 CTTACTTAATTACCCTGAATTAAGTT-TTTATTAAC-TACTTAATTACCCTGAATTAAATTATTC
* * * *
53825 ACTGACTTACTTAATTACCCTGAACTAAGCTATT---T-ACTGACTTAATTACCCTGGATTAAGT
64 ACTGACTTACTTAATTACCCTGAATTAAGTTATTCACTAACTTACTTAATTACCCTGAATTAAGT
53886 TA--C-CTGTTA
129 TATTCACTG--A
* * * * * *
53895 CTTACTTAATCACCCTGAATTAAGTTGATTACTAAATTACTTAATTACCCTGAATTAAATTAATA
1 CTTACTTAATTACCCTGAATTAAGTT-TTTA-TTAACTACTTAATTACCCTGAATTAAATTATTC
*
53960 ACTGGA-TTTCTTAATTACCCTGAATTAAGTTATTGACTTACTAACTTACTTAATTACCCTGAAT
64 ACT-GACTTACTTAATTACCCTGAATTAAGTTATT--C--ACTAACTTACTTAATTACCCTGAAT
54024 TAAGTTATTCACTGA
124 TAAGTTATTCACTGA
* *
54039 CTTGCTTAATTACCCTGAATTAAGTTTCTTATTATCTCACTTAATTACCCTGAATTAAATTATTC
1 CTTACTTAATTACCCTGAATTAAGTTT-TTATTAACT-ACTTAATTACCCTGAATTAAATTATTC
* * * *
54104 ACTGACTCACTTAACTACCCTGAATTAAATTATTCACTGACTTACTTAATTACCCTGAATTAAGT
64 ACTGACTTACTTAATTACCCTGAATTAAGTTATTCACTAACTTACTTAATTACCCTGAATTAAGT
*
54169 TACTT-ATTGA
129 TA-TTCACTGA
* * * *
54179 CTTACTTAATTTACCCTGAATTAAGTTATTCACTGACCTACTTAATTTACCCTGAATTAAGTTAT
1 CTTACTTAA-TTACCCTGAATTAAGTT-TTTA-TTAACTACTTAA-TTACCCTGAATTAAATTAT
*
54244 TCACTGACCTACTTAATTACCCTGAATTAAGTTA
62 TCACTGACTTACTTAATTACCCTGAATTAAGTTA
54278 CTTATTACTG
Statistics
Matches: 321, Mismatches: 41, Indels: 35
0.81 0.10 0.09
Matches are distributed among these distances:
135 77 0.24
136 4 0.01
140 43 0.13
141 27 0.08
142 55 0.17
143 31 0.10
144 80 0.25
145 1 0.00
146 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (138 bp):
CTTACTTAATTACCCTGAATTAAGTTTTTATTAACTACTTAATTACCCTGAATTAAATTATTCAC
TGACTTACTTAATTACCCTGAATTAAGTTATTCACTAACTTACTTAATTACCCTGAATTAAGTTA
TTCACTGA
Found at i:62331 original size:6 final size:6
Alignment explanation
Indices: 62322--62348 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
62312 AAACCAAAGC
62322 AAATCT AAATCT AAATCT AAATCT AAA
1 AAATCT AAATCT AAATCT AAATCT AAA
62349 GAAAATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATCT
Found at i:68989 original size:39 final size:39
Alignment explanation
Indices: 68944--69028 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 39
68934 TAAATAAAAA
* * *
68944 TTAAAAAGCAGAAACAGAAAATAAAAA-TATTTTTTTATT
1 TTAAAAAGCAAAAACAGAAAAGAAAAATTAATTTTTT-TT
* *
68983 TTAAAAAGGAAAAACGGAAAAGAAAAATTAATTTTTTTT
1 TTAAAAAGCAAAAACAGAAAAGAAAAATTAATTTTTTTT
*
69022 TCAAAAA
1 TTAAAAA
69029 AAAATCGGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.31
Consensus pattern (39 bp):
TTAAAAAGCAAAAACAGAAAAGAAAAATTAATTTTTTTT
Done.