Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010610.1 Corchorus capsularis cultivar CVL-1 contig10631, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60096

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2391--2503
56
2.0
56
100
0
226
29
21
24
24
1.99
4535--4628
33
2.9
32
75
7
91
35
17
24
23
1.95
6583--7864
696
1.8
697
91
1
2133
34
13
15
35
1.87
7942--7974
11
3.0
11
86
13
50
60
0
0
39
0.97
7942--7979
14
2.7
15
92
8
62
60
0
0
39
0.97
9436--9486
26
2.0
26
88
0
75
21
15
17
45
1.86
12619--12654
18
1.9
18
88
5
54
47
5
22
25
1.73
13935--13968
16
2.2
16
89
5
52
29
2
8
58
1.43
16008--16080
36
2.0
37
84
5
96
47
6
9
35
1.63
28604--28785
82
2.2
82
85
3
233
22
9
28
39
1.86
28617--28785
41
4.1
41
74
8
144
22
10
27
39
1.87
29492--29525
11
3.2
10
84
15
50
29
2
17
50
1.61
32318--32503
94
2.0
94
98
0
363
34
15
6
43
1.73
32357--32501
46
3.1
46
61
21
102
37
14
5
42
1.69
36557--36586
11
2.7
11
94
0
51
33
0
20
46
1.51
38909--39308
135
3.0
134
91
3
632
29
25
25
19
1.99
42119--42160
21
2.0
21
86
9
59
35
16
21
26
1.94
46067--46102
19
1.9
18
88
5
54
41
2
22
33
1.68
51474--51509
19
1.9
18
88
5
54
41
2
22
33
1.68

Tables:   1

The End!