Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010612.1 Corchorus capsularis cultivar CVL-1 contig10633, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88398
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:380 original size:56 final size:56
Alignment explanation
Indices: 294--407 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
284 CGTTCTACTG
294 AATTGCTTTTTAATTTAATACATGATTAAAGATTAGCAACGATATATGCAAGAAGT
1 AATTGCTTTTTAATTTAATACATGATTAAAGATTAGCAACGATATATGCAAGAAGT
350 AATTGCTTTTTAATTTAATACATGATTAAAGATTAGCAACGATATATGCAAGAAGT
1 AATTGCTTTTTAATTTAATACATGATTAAAGATTAGCAACGATATATGCAAGAAGT
406 AA
1 AA
408 ACTTCAATTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (56 bp):
AATTGCTTTTTAATTTAATACATGATTAAAGATTAGCAACGATATATGCAAGAAGT
Found at i:20023 original size:13 final size:13
Alignment explanation
Indices: 20005--20033 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
19995 AATAGTGTAA
20005 TAAAAAGAAATTC
1 TAAAAAGAAATTC
20018 TAAAAAGAAATTC
1 TAAAAAGAAATTC
20031 TAA
1 TAA
20034 GGTGATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (13 bp):
TAAAAAGAAATTC
Found at i:20044 original size:21 final size:21
Alignment explanation
Indices: 20018--20066 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
20008 AAAGAAATTC
**
20018 TAAAAAGAAATTCTAAGGTGA
1 TAAAAAGAAATTCTAAGGAAA
20039 TAAAAAGAAATTCTAAGGAAA
1 TAAAAAGAAATTCTAAGGAAA
20060 TAAAAAG
1 TAAAAAG
20067 TCATCATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.59, C:0.04, G:0.16, T:0.20
Consensus pattern (21 bp):
TAAAAAGAAATTCTAAGGAAA
Found at i:26005 original size:11 final size:11
Alignment explanation
Indices: 25989--26014 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25979 TTTTCGCAGT
25989 AAAAAAAATAA
1 AAAAAAAATAA
26000 AAAAAAAATAA
1 AAAAAAAATAA
26011 AAAA
1 AAAA
26015 TAATGTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:26208 original size:13 final size:12
Alignment explanation
Indices: 26178--26220 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
26168 CATCGATACC
26178 TCGATATATCCG
1 TCGATATATCCG
26190 TCGATATATCCG
1 TCGATATATCCG
*
26202 TTCGATATATCCA
1 -TCGATATATCCG
26215 TCGATA
1 TCGATA
26221 CCTGTATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 18 0.62
13 11 0.38
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (12 bp):
TCGATATATCCG
Found at i:26290 original size:12 final size:12
Alignment explanation
Indices: 26258--26296 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
26248 ATGGAATTAA
26258 ATATCCGTCG--
1 ATATCCGTCGAT
26268 ATA-CC-TCGAT
1 ATATCCGTCGAT
26278 ATATCCGTCGAT
1 ATATCCGTCGAT
26290 ATATCCG
1 ATATCCG
26297 ATATCTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 3 0.12
9 2 0.08
10 6 0.24
11 2 0.08
12 12 0.48
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (12 bp):
ATATCCGTCGAT
Found at i:26420 original size:10 final size:10
Alignment explanation
Indices: 26407--26432 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26397 AAATCTCGAT
26407 ATATCCGTAA
1 ATATCCGTAA
26417 ATATCCGTAA
1 ATATCCGTAA
26427 ATATCC
1 ATATCC
26433 ATATTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (10 bp):
ATATCCGTAA
Found at i:31592 original size:2 final size:2
Alignment explanation
Indices: 31585--31614 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
31575 ACAATAAGAA
31585 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
31615 TTTTTCCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:34771 original size:32 final size:32
Alignment explanation
Indices: 34734--34841 Score: 84
Period size: 32 Copynumber: 3.4 Consensus size: 32
34724 TTCTCATGTG
34734 AAATCAAATTTGATCTTTGCTTCTAAGAGTTC
1 AAATCAAATTTGATCTTTGCTTCTAAGAGTTC
* * *
34766 AAATCATAATTGAAGACTTCTTTG--AC-AAAAG--C
1 AAATCA-AATT--TGA--TCTTTGCTTCTAAGAGTTC
*
34798 -AATCAAATTTGAACTTTGCTTCTAAGAGTTC
1 AAATCAAATTTGATCTTTGCTTCTAAGAGTTC
*
34829 AAATCAAAGTTGA
1 AAATCAAATTTGA
34842 AGACCTCTTG
Statistics
Matches: 57, Mismatches: 8, Indels: 22
0.66 0.09 0.25
Matches are distributed among these distances:
26 5 0.09
28 3 0.05
29 4 0.07
30 4 0.07
31 6 0.11
32 18 0.32
33 4 0.07
34 4 0.07
35 3 0.05
37 6 0.11
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (32 bp):
AAATCAAATTTGATCTTTGCTTCTAAGAGTTC
Found at i:39246 original size:2 final size:2
Alignment explanation
Indices: 39241--39269 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
39231 ATATAGTAAG
39241 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
39270 GCTCAAAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41998 original size:2 final size:2
Alignment explanation
Indices: 41991--42074 Score: 168
Period size: 2 Copynumber: 42.0 Consensus size: 2
41981 CGTTTCATAC
41991 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
42033 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
42075 ATACTACGAC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 82 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:50913 original size:20 final size:20
Alignment explanation
Indices: 50888--50928 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
50878 TTAATTATTG
50888 ATATGTTAAGTGGATTTTTA
1 ATATGTTAAGTGGATTTTTA
*
50908 ATATGTTAAGTGGGTTTTTA
1 ATATGTTAAGTGGATTTTTA
50928 A
1 A
50929 AACATCTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (20 bp):
ATATGTTAAGTGGATTTTTA
Found at i:60981 original size:22 final size:22
Alignment explanation
Indices: 60956--61502 Score: 169
Period size: 22 Copynumber: 24.6 Consensus size: 22
60946 ATGATTTTAT
60956 TATGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTTCC
* ** *
60978 TATGAAATTTTAATAATGATACAC
1 TATGAAATTTTGATAA-CCTTC-C
* * * **
61002 TATGGAATTTCGAGAACCTTTT
1 TATGAAATTTTGATAACCTTCC
* ** * *
61024 TAT-AATTTTTTTTTAACTTTCT
1 TATGAA-ATTTTGATAACCTTCC
* * *
61046 TATGAAGTTTTGTTAACCTCCC
1 TATGAAATTTTGATAACCTTCC
* * *
61068 TAAGGAATTTTGA-AGACC-TCAA
1 TATGAAATTTTGATA-ACCTTC-C
* *
61090 TATGAATTTTTAATAA-CTTCCC
1 TATGAAATTTTGATAACCTT-CC
* **
61112 AATGAAATTTTGATAACCAACAC
1 TATGAAATTTTGATAACCTTC-C
* *
61135 TATGAGATGTTGATAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* * * *
61156 ATATATGATATATTGATAACC-ACGT
1 ---TATGAAATTTTGATAACCTTC-C
* * *
61181 TATGAAAATTTAAAAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* *
61202 ATATG-AATTGTT-AGTAATCATACTC
1 -TATGAAATT-TTGA-TAA-CCTTC-C
* *
61227 TAT--AATTTTGATAATC-ACAC
1 TATGAAATTTTGATAACCTTC-C
* * *
61247 TATGAAGTTGTGATAACC-ACGC
1 TATGAAATTTTGATAACCTTC-C
*
61269 TATGAAATTTTGATAAATCTTCC
1 TATGAAATTTTGAT-AACCTTCC
*
61292 TAT-AATATTTTGATAAACCTCCC
1 TATGAA-ATTTTGAT-AACCTTCC
* **
61315 TATAAAATTTTGATAACCTTTT
1 TATGAAATTTTGATAACCTTCC
* *
61337 TATGAAATCTTGATAACCTCCC
1 TATGAAATTTTGATAACCTTCC
** *
61359 TATGATTTTTTGATAACC-TCAT
1 TATGAAATTTTGATAACCTTC-C
* * *
61381 TATGAAATTTTGTTAATCTCCC
1 TATGAAATTTTGATAACCTTCC
* * *
61403 TATGAAATTTTGATCTA-CATAC
1 TATGAAATTTTGAT-AACCTTCC
* *
61425 TATGAAATTTTGATAACCCTCT
1 TATGAAATTTTGATAACCTTCC
* **
61447 TATGAAATTTTGA-AAACTAAAC
1 TATGAAATTTTGATAACCT-TCC
* *
61469 TATGAAATTTTGATATCCTGCC
1 TATGAAATTTTGATAACCTTCC
61491 --TGAAATTTTGAT
1 TATGAAATTTTGAT
61503 TACTCCATAA
Statistics
Matches: 380, Mismatches: 111, Indels: 70
0.68 0.20 0.12
Matches are distributed among these distances:
20 18 0.05
21 14 0.04
22 242 0.64
23 68 0.18
24 37 0.10
25 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCC
Found at i:61407 original size:66 final size:65
Alignment explanation
Indices: 61043--61483 Score: 209
Period size: 66 Copynumber: 6.6 Consensus size: 65
61033 TTTTTAACTT
* * * * * * *
61043 TCTTATGAAGTTTTGTTAACCTCCCTAAGGAATTTTGA-AGACCTCAATATGA-ATTTTTAATAA
1 TCTTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAAACCTC-CTATGATA-TTTTGATAA
*
61106 CT
64 CC
** * * * * *
61108 TCCCAATGAAATTTTGATAACCAACACTATGAGATGTTGAT-AACCTCCATATATGATATATTGA
1 T-CTTATGAAATTTTGATAACC-TCCCTATGAAATTTTGATAAACCTCC---TATGATATTTTGA
61172 TAACC
61 TAACC
* * * * * * *
61177 ACGTTATGAAAATTTAAAAACCTCCATATG-AATTGTT-AGTAATCATACTCTAT-A-ATTTTGA
1 TC-TTATGAAATTTTGATAACCTCCCTATGAAATT-TTGA-TAAACCT-C-CTATGATATTTTGA
61238 TAATCAC
61 TAA-C-C
* * * * * * *
61245 AC-TATGAAGTTGTGATAACCACGCTATGAAATTTTGATAAATCTTCCTATAATATTTTGATAAA
1 TCTTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAAA-CCTCCTATGATATTTTGAT-AA
61309 CC
64 CC
* * *** * *
61311 TCCCTATAAAATTTTGATAACCTTTTTATGAAATCTTGAT-AACCTCCCTATGATTTTTTGATAA
1 T-CTTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAAACCT-CCTATGATATTTTGATAA
61375 CC
64 CC
* * ** * * *
61377 TCATTATGAAATTTTGTTAATCTCCCTATGAAATTTTGATCTACATACTATGAAATTTTGATAAC
1 TC-TTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAAACCTCCTATGATATTTTGATAA-
61442 CC
64 CC
* **
61444 TCTTATGAAATTTTGA-AAACTAAACTATGAAATTTTGATA
1 TCTTATGAAATTTTGATAACCT-CCCTATGAAATTTTGATA
61484 TCCTGCCTGA
Statistics
Matches: 279, Mismatches: 69, Indels: 55
0.69 0.17 0.14
Matches are distributed among these distances:
65 10 0.04
66 130 0.47
67 61 0.22
68 45 0.16
69 30 0.11
70 2 0.01
71 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (65 bp):
TCTTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAAACCTCCTATGATATTTTGATAACC
Found at i:61650 original size:22 final size:22
Alignment explanation
Indices: 61593--61667 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
61583 CTATGAAATT
** *
61593 TGAAATTTTTGTAATCACATTT-
1 TGAAATTTTAATAATCTC-TTTA
* *
61615 TGAAAATTTGATAATCTCTTTA
1 TGAAATTTTAATAATCTCTTTA
* *
61637 TGAAATTTTAATAACCTCTTCA
1 TGAAATTTTAATAATCTCTTTA
*
61659 TAAAATTTT
1 TGAAATTTT
61668 GTTGACCCTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
21 3 0.07
22 40 0.93
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (22 bp):
TGAAATTTTAATAATCTCTTTA
Found at i:61686 original size:22 final size:23
Alignment explanation
Indices: 61615--61779 Score: 63
Period size: 22 Copynumber: 7.3 Consensus size: 23
61605 AATCACATTT
* * *
61615 TGAAAATTTGATAATCTCTT-TA
1 TGAAATTTTAATAACCTCTTCTA
61637 TGAAATTTTAATAACCTCTTC-A
1 TGAAATTTTAATAACCTCTTCTA
* ** *
61659 TAAAATTTTGTTGACC-CTTCTA
1 TGAAATTTTAATAACCTCTTCTA
* * * * *
61681 TGAAATTCTGATAATCACAT-TA
1 TGAAATTTTAATAACCTCTTCTA
* * * *
61703 TGTAATTTTGATAACCTC-GCTT
1 TGAAATTTTAATAACCTCTTCTA
* ** *
61725 TGAAATTTTGATAACAAC-ACTA
1 TGAAATTTTAATAACCTCTTCTA
* * *
61747 TGAAATTTTGATAATCTAATCTCTA
1 TGAAATTTTAATAACCT-CT-TCTA
61772 TGAAATTT
1 TGAAATTT
61780 CGTTTATAAC
Statistics
Matches: 107, Mismatches: 29, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
21 4 0.04
22 90 0.84
23 2 0.02
25 11 0.10
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (23 bp):
TGAAATTTTAATAACCTCTTCTA
Found at i:61778 original size:25 final size:22
Alignment explanation
Indices: 61678--61779 Score: 89
Period size: 22 Copynumber: 4.5 Consensus size: 22
61668 GTTGACCCTT
*
61678 CTATGAAATTCTGATAATC-ACA
1 CTATGAAATTTTGATAA-CAACA
* * ** *
61700 TTATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAACAACA
*
61722 CTTTGAAATTTTGATAACAACA
1 CTATGAAATTTTGATAACAACA
*
61744 CTATGAAATTTTGATAATCTAATCT
1 CTATGAAATTTTGATAA-C-AA-CA
61769 CTATGAAATTT
1 CTATGAAATTT
61780 CGTTTATAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
21 1 0.02
22 47 0.75
23 1 0.02
24 2 0.03
25 12 0.19
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (22 bp):
CTATGAAATTTTGATAACAACA
Found at i:61875 original size:22 final size:22
Alignment explanation
Indices: 61635--61898 Score: 70
Period size: 22 Copynumber: 11.8 Consensus size: 22
61625 ATAATCTCTT
*
61635 TATGAAATTTTAATAACCTCTTCA
1 TATGAAATTTTGATAA-C-CTTCA
* *
61659 TA--AAATTTTGTTGACCCTTC-
1 TATGAAATTTTGAT-AACCTTCA
* * *
61679 TATGAAATTCTGATAATC-ACA
1 TATGAAATTTTGATAACCTTCA
* *
61700 TTATGTAATTTTGATAACC-TCGC
1 -TATGAAATTTTGATAACCTTC-A
* **
61723 TTTGAAATTTTGATAA-CAACA
1 TATGAAATTTTGATAACCTTCA
* *
61744 CTATGAAATTTTGATAATCTAATCTC
1 -TATGAAATTTTGATAACCT--TC-A
*
61770 TATGAAATTTCGTTTATAA-C-TC-
1 TATGAAA-TT--TTGATAACCTTCA
*
61792 TATGAGA-TTTGATAACCTTC-
1 TATGAAATTTTGATAACCTTCA
* * *
61812 TATCAAATTTTGGTACTCCTT-A
1 TATGAAATTTTGATA-ACCTTCA
*
61834 TGAAATTGAGACTTTT-ATAACCTTCA
1 T---A-TGA-AATTTTGATAACCTTCA
*
61860 TATGAAATTTTGATAACC-ACA
1 TATGAAATTTTGATAACCTTCA
*
61881 CTATAAAATTTTGATAAC
1 -TATGAAATTTTGATAAC
61899 TTCCCCAGAA
Statistics
Matches: 177, Mismatches: 35, Indels: 58
0.66 0.13 0.21
Matches are distributed among these distances:
18 6 0.03
19 1 0.01
20 11 0.06
21 20 0.11
22 99 0.56
23 3 0.02
24 4 0.02
25 13 0.07
26 8 0.05
27 6 0.03
28 6 0.03
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCA
Found at i:61937 original size:332 final size:332
Alignment explanation
Indices: 61548--62209 Score: 1306
Period size: 332 Copynumber: 2.0 Consensus size: 332
61538 TGGTAATCAT
61548 ACTATAAAATTTTGATAACTTCCCCAGAAATACCACTATGAAATTTGAAATTTTTGTAATCACAT
1 ACTATAAAATTTTGATAACTTCCCCAGAAATACCACTATGAAATTTGAAATTTTTGTAATCACAT
*
61613 TTTGAAAATTTGATAATCTCTTTATGAAATTTTAATAACCTCTTCATAAAATTTTGTTGACCCTT
66 TTTGAAAATTTGATAACCTCTTTATGAAATTTTAATAACCTCTTCATAAAATTTTGTTGACCCTT
61678 CTATGAAATTCTGATAATCACATTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAAC
131 CTATGAAATTCTGATAATCACATTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAAC
61743 ACTATGAAATTTTGATAATCTAATCTCTATGAAATTTCGTTTATAACTCTATGAGATTTGATAAC
196 ACTATGAAATTTTGATAATCTAATCTCTATGAAATTTCGTTTATAACTCTATGAGATTTGATAAC
61808 CTTCTATCAAATTTTGGTACTCCTTATGAAATTGAGACTTTTATAACCTTCATATGAAATTTTGA
261 CTTCTATCAAATTTTGGTACTCCTTATGAAATTGAGACTTTTATAACCTTCATATGAAATTTTGA
61873 TAACCAC
326 TAACCAC
61880 ACTATAAAATTTTGATAACTTCCCCAGAAATACCACTATGAAATTTGAAATTTTTGTAATCACAT
1 ACTATAAAATTTTGATAACTTCCCCAGAAATACCACTATGAAATTTGAAATTTTTGTAATCACAT
*
61945 TTTGAAAATTTGATAACCTCTTTATGAAATTTTAATAACCTCTTTATAAAATTTTGTTGACCCTT
66 TTTGAAAATTTGATAACCTCTTTATGAAATTTTAATAACCTCTTCATAAAATTTTGTTGACCCTT
62010 CTATGAAATTCTGATAATCACATTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAAC
131 CTATGAAATTCTGATAATCACATTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAAC
62075 ACTATGAAATTTTGATAATCTAATCTCTATGAAATTTCGTTTATAACTCTATGAGATTTGATAAC
196 ACTATGAAATTTTGATAATCTAATCTCTATGAAATTTCGTTTATAACTCTATGAGATTTGATAAC
62140 CTTCTATCAAATTTTGGTACTCCTTATGAAATTGAGACTTTTATAACCTTCATATGAAATTTTGA
261 CTTCTATCAAATTTTGGTACTCCTTATGAAATTGAGACTTTTATAACCTTCATATGAAATTTTGA
62205 TAACC
326 TAACC
62210 TCCCCATGAA
Statistics
Matches: 328, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
332 328 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.40
Consensus pattern (332 bp):
ACTATAAAATTTTGATAACTTCCCCAGAAATACCACTATGAAATTTGAAATTTTTGTAATCACAT
TTTGAAAATTTGATAACCTCTTTATGAAATTTTAATAACCTCTTCATAAAATTTTGTTGACCCTT
CTATGAAATTCTGATAATCACATTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAAC
ACTATGAAATTTTGATAATCTAATCTCTATGAAATTTCGTTTATAACTCTATGAGATTTGATAAC
CTTCTATCAAATTTTGGTACTCCTTATGAAATTGAGACTTTTATAACCTTCATATGAAATTTTGA
TAACCAC
Found at i:61972 original size:22 final size:22
Alignment explanation
Indices: 61947--62071 Score: 87
Period size: 22 Copynumber: 5.7 Consensus size: 22
61937 AATCACATTT
61947 TGAAAATTTGATAACCTCTTTA
1 TGAAAATTTGATAACCTCTTTA
* *
61969 TGAAATTTTAATAACCTCTTTA
1 TGAAAATTTGATAACCTCTTTA
* *
61991 T-AAAATTTTGTTGACC-CTTCTA
1 TGAAAA-TTTGATAACCTCTT-TA
* * *
62013 TG-AAATTCTGATAATCACATTA
1 TGAAAATT-TGATAACCTCTTTA
* * *
62035 TGTAATTTTGATAACCTCGCTT-
1 TGAAAATTTGATAACCTC-TTTA
*
62057 TGAAATTTTGATAAC
1 TGAAAATTTGATAAC
62072 AACACTATGA
Statistics
Matches: 81, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
21 8 0.10
22 65 0.80
23 8 0.10
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (22 bp):
TGAAAATTTGATAACCTCTTTA
Found at i:62082 original size:22 final size:23
Alignment explanation
Indices: 62010--62111 Score: 93
Period size: 22 Copynumber: 4.5 Consensus size: 23
62000 GTTGACCCTT
*
62010 CTATGAAATTCTGATAATC-ACA
1 CTATGAAATTTTGATAATCAACA
* * ** *
62032 TTATGTAATTTTGATAA-CCTCG
1 CTATGAAATTTTGATAATCAACA
*
62054 CTTTGAAATTTTGATAA-CAACA
1 CTATGAAATTTTGATAATCAACA
*
62076 CTATGAAATTTTGATAATCTAATCT
1 CTATGAAATTTTGATAATC-AA-CA
62101 CTATGAAATTT
1 CTATGAAATTT
62112 CGTTTATAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
21 1 0.02
22 47 0.75
23 1 0.02
24 2 0.03
25 12 0.19
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (23 bp):
CTATGAAATTTTGATAATCAACA
Found at i:62207 original size:22 final size:22
Alignment explanation
Indices: 61947--62210 Score: 68
Period size: 22 Copynumber: 11.8 Consensus size: 22
61937 AATCACATTT
* *
61947 TGAAAATTTGATAACC-TCTTTA
1 TGAAATTTTGATAACCTTC-ATA
* *
61969 TGAAATTTTAATAACC-TCTTTA
1 TGAAATTTTGATAACCTTC-ATA
* * *
61991 TAAAATTTTGTTGACCCTTC-TA
1 TGAAATTTTGAT-AACCTTCATA
* * *
62013 TGAAATTCTGATAATC-ACATTA
1 TGAAATTTTGATAACCTTCA-TA
* * *
62035 TGTAATTTTGATAACC-TCGCTT
1 TGAAATTTTGATAACCTTC-ATA
**
62057 TGAAATTTTGATAA-CAACACTA
1 TGAAATTTTGATAACCTTCA-TA
* *
62079 TGAAATTTTGATAATCTAATCTCTA
1 TGAAATTTTGATAACCT--TC-ATA
*
62104 TGAAATTTCGTTTATAA-C-TC-TA
1 TGAAA-TT--TTGATAACCTTCATA
*
62126 TGAGA-TTTGATAACCTTC-TA
1 TGAAATTTTGATAACCTTCATA
* * *
62146 TCAAATTTTGGTACTCCTT-ATGAAA
1 TGAAATTTTGATA-ACCTTCAT---A
*
62171 TTGAGACTTTT-ATAACCTTCATA
1 -TGA-AATTTTGATAACCTTCATA
62194 TGAAATTTTGATAACCT
1 TGAAATTTTGATAACCT
62211 CCCCATGAAG
Statistics
Matches: 179, Mismatches: 37, Indels: 52
0.67 0.14 0.19
Matches are distributed among these distances:
18 6 0.03
19 1 0.01
20 9 0.05
21 14 0.08
22 107 0.60
23 5 0.03
24 4 0.02
25 13 0.07
26 8 0.04
27 6 0.03
28 6 0.03
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.42
Consensus pattern (22 bp):
TGAAATTTTGATAACCTTCATA
Found at i:62218 original size:22 final size:22
Alignment explanation
Indices: 62178--62294 Score: 80
Period size: 22 Copynumber: 5.4 Consensus size: 22
62168 AAATTGAGAC
* *
62178 TTTT-ATAACCTTCATATGAAA
1 TTTTGATAACCTCCCTATGAAA
* *
62199 TTTTGATAACCTCCCCATGAAG
1 TTTTGATAACCTCCCTATGAAA
*
62221 TATT-AGTAACCT-CCTAATGAAA
1 TTTTGA-TAACCTCCCT-ATGAAA
* * * *
62243 TTTTGTTAACCACACTATAAAA
1 TTTTGATAACCTCCCTATGAAA
* *
62265 TTCTT-ATAACCTCGCTATGACA
1 TT-TTGATAACCTCCCTATGAAA
62287 TTTTGATA
1 TTTTGATA
62295 TTCTCTTTGA
Statistics
Matches: 72, Mismatches: 17, Indels: 13
0.71 0.17 0.13
Matches are distributed among these distances:
21 9 0.12
22 59 0.82
23 4 0.06
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTTGATAACCTCCCTATGAAA
Found at i:62363 original size:22 final size:22
Alignment explanation
Indices: 62331--62379 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
62321 TTGTGATAAT
*
62331 TAACCACCCTAAGAAATT-TCAA
1 TAACCAACCTAAGAAATTCT-AA
62353 TAACCAACCTAAGAAATTCTAA
1 TAACCAACCTAAGAAATTCTAA
62375 TAACC
1 TAACC
62380 TGATCCTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.47, C:0.27, G:0.04, T:0.22
Consensus pattern (22 bp):
TAACCAACCTAAGAAATTCTAA
Found at i:62441 original size:44 final size:44
Alignment explanation
Indices: 62385--62504 Score: 154
Period size: 44 Copynumber: 2.7 Consensus size: 44
62375 TAACCTGATC
* *
62385 CTATGAAATTTTGGTAATCATGC-TATGAAATTTTGGTAACCACA
1 CTATGAAATTTTGATAA-CATCCATATGAAATTTTGGTAACCACA
* *
62429 CTATGAAATTTTGATAACTTCCATATGAAATTTTGGTAAGCACA
1 CTATGAAATTTTGATAACATCCATATGAAATTTTGGTAACCACA
* *
62473 CTATGGAATTTTGATAACCT-CATCATGAAATT
1 CTATGAAATTTTGATAACATCCAT-ATGAAATT
62505 ATAATAACCA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
43 6 0.09
44 62 0.91
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (44 bp):
CTATGAAATTTTGATAACATCCATATGAAATTTTGGTAACCACA
Found at i:62504 original size:22 final size:23
Alignment explanation
Indices: 62365--62535 Score: 108
Period size: 22 Copynumber: 7.7 Consensus size: 23
62355 ACCAACCTAA
* * *
62365 GAAATTCTAATAACCTGATCCTAT
1 GAAATTTTGATAACCTCAT-CTAT
*
62389 GAAATTTTGGTAA--TCATGCTAT
1 GAAATTTTGATAACCTCAT-CTAT
* *
62411 GAAATTTTGGTAACCACA-CTAT
1 GAAATTTTGATAACCTCATCTAT
*
62433 GAAATTTTGATAACTTC--CATAT
1 GAAATTTTGATAACCTCATC-TAT
* * *
62455 GAAATTTTGGTAAGCACA-CTAT
1 GAAATTTTGATAACCTCATCTAT
*
62477 GGAATTTTGATAACCTCATC-AT
1 GAAATTTTGATAACCTCATCTAT
* * *
62499 GAAATTATAATAA-C-CATCTTGT
1 GAAATTTTGATAACCTCATC-TAT
*
62521 GGAATTTTGATAACC
1 GAAATTTTGATAACC
62536 ACATAGAGAC
Statistics
Matches: 115, Mismatches: 24, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
20 4 0.03
21 2 0.02
22 94 0.82
23 3 0.03
24 12 0.10
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (23 bp):
GAAATTTTGATAACCTCATCTAT
Found at i:62512 original size:66 final size:66
Alignment explanation
Indices: 62343--62512 Score: 166
Period size: 66 Copynumber: 2.5 Consensus size: 66
62333 ACCACCCTAA
** * * * *
62343 GAAATTTCAATAACCA-ACCTAAGAAATTCTAATAACCTGATCC-TATGAAATTTTGGTAATCAT
1 GAAATTTTGATAACCACA-CTATGAAATTATAATAA-CT--TCCATATGAAATTTTGGTAAGCAC
*
62406 GCTAT
62 ACTAT
* * *
62411 GAAATTTTGGTAACCACACTATGAAATTTTGATAACTTCCATATGAAATTTTGGTAAGCACACTA
1 GAAATTTTGATAACCACACTATGAAATTATAATAACTTCCATATGAAATTTTGGTAAGCACACTA
62476 T
66 T
* *
62477 GGAATTTTGATAACCTCA-TCATGAAATTATAATAAC
1 GAAATTTTGATAACCACACT-ATGAAATTATAATAAC
62513 CATCTTGTGG
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
65 4 0.05
66 51 0.60
67 2 0.02
68 27 0.32
69 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (66 bp):
GAAATTTTGATAACCACACTATGAAATTATAATAACTTCCATATGAAATTTTGGTAAGCACACTA
T
Found at i:62733 original size:19 final size:20
Alignment explanation
Indices: 62702--62739 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
62692 TATTGACATT
62702 TAAAAATTGAAATT-AAAAG
1 TAAAAATTGAAATTCAAAAG
62721 TAAAATATT-AAATTCAAAA
1 TAAAA-ATTGAAATTCAAAA
62740 AATAATAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (20 bp):
TAAAAATTGAAATTCAAAAG
Found at i:62842 original size:25 final size:25
Alignment explanation
Indices: 62811--62881 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
62801 CGGTCTAAAT
62811 TGAAAATTTTAATATATTTTAAATAA
1 TGAAAATTTTAATATATTTT-AATAA
* * *
62837 T-AAAATTATACTAAATTTTAATAA
1 TGAAAATTTTAATATATTTTAATAA
*
62861 TGGAAATTTATAAATATATTT
1 TGAAAATTT-T-AATATATTT
62882 GGAAAAAGGG
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
24 6 0.17
25 20 0.57
26 2 0.06
27 7 0.20
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (25 bp):
TGAAAATTTTAATATATTTTAATAA
Found at i:63057 original size:167 final size:174
Alignment explanation
Indices: 62752--63077 Score: 418
Period size: 167 Copynumber: 1.9 Consensus size: 174
62742 TAATAGTAAA
*
62752 GGAAATTTACATGTTCATCAACTAAAATTAATTTGACAAACTTACAACTCGGTCTAAATTGAAAA
1 GGAAATTTACATGTTCATCAACTAAAATCAATTTGACAAACTTACAACTCGGTCTAAATTGAAAA
*
62817 TTTTAATATATTTTAAATAATAAAATTATACTAAATTTTAATAATGGAAATTTATAAATATATTT
66 TTTTAATATA-TTTAAATAATAAAATTATACTAAATTTTAATAATGGAAATTTAGAAATATATTT
* * **
62882 GGAAAAAGGGTGTAATCGGAAAACATAAAATTTCCCATTATTCGT
130 GAAAAAAGGATACAATCGGAAAACATAAAATTTCCCATTATTCGT
* * * *
62927 GGAAATTTGCATGTTCATCAA-TGAAAATCAATTTTACAAAACTTATAATTCGGTCTAAATTG-A
1 GGAAATTTACATGTTCATCAACT-AAAATCAATTTGAC-AAACTTACAACTCGGTCTAAATTGAA
** * **
62990 AATTTT-ATA-A-TT-AATTTTTAAA-TA-A-TAAATTTTAATAATGTCAATTTAGAAATATATT
64 AATTTTAATATATTTAAATAATAAAATTATACTAAATTTTAATAATGGAAATTTAGAAATATATT
*
63048 TGAAAAAAGGATACAATCGGAAGACATAAA
129 TGAAAAAAGGATACAATCGGAAAACATAAA
63078 GTTTTTCATT
Statistics
Matches: 133, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
167 55 0.41
168 1 0.01
169 2 0.02
170 7 0.05
171 2 0.02
173 1 0.01
174 4 0.03
175 39 0.29
176 22 0.17
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (174 bp):
GGAAATTTACATGTTCATCAACTAAAATCAATTTGACAAACTTACAACTCGGTCTAAATTGAAAA
TTTTAATATATTTAAATAATAAAATTATACTAAATTTTAATAATGGAAATTTAGAAATATATTTG
AAAAAAGGATACAATCGGAAAACATAAAATTTCCCATTATTCGT
Found at i:63443 original size:30 final size:31
Alignment explanation
Indices: 63407--63474 Score: 111
Period size: 30 Copynumber: 2.2 Consensus size: 31
63397 TAGTGGCAGT
*
63407 TTGGAAATATGTTTTAAAAA-AAGGGTACAA
1 TTGGAAATATATTTTAAAAATAAGGGTACAA
63437 TTGGAAATATATTTTAAAAATAAGGGTACAA
1 TTGGAAATATATTTTAAAAATAAGGGTACAA
*
63468 TCGGAAA
1 TTGGAAA
63475 ACATAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.29
Consensus pattern (31 bp):
TTGGAAATATATTTTAAAAATAAGGGTACAA
Found at i:67838 original size:57 final size:58
Alignment explanation
Indices: 67765--67879 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
67755 CAACATGCAA
*
67765 TTCCAACCAATTTCCTATCTCAT-TTCTTTCTCTCTTACTCTCTTAGCTATTACTCTC
1 TTCCAACCAATTTCCTATCCCATCTTCTTTCTCTCTTACTCTCTTAGCTATTACTCTC
*
67822 TTCCTACCAATTTCCTATCCCATCTTCTTTCTCTCTTACTCTCTTAGCTATTACTCTC
1 TTCCAACCAATTTCCTATCCCATCTTCTTTCTCTCTTACTCTCTTAGCTATTACTCTC
67880 AAAGCTTCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
57 21 0.38
58 34 0.62
ACGTcount: A:0.17, C:0.35, G:0.02, T:0.47
Consensus pattern (58 bp):
TTCCAACCAATTTCCTATCCCATCTTCTTTCTCTCTTACTCTCTTAGCTATTACTCTC
Found at i:69238 original size:15 final size:15
Alignment explanation
Indices: 69218--69259 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
69208 TAAAAATGAC
69218 ATGAATGAAACAGAG
1 ATGAATGAAACAGAG
*
69233 ATGAATGAAACAGTG
1 ATGAATGAAACAGAG
69248 ATGAATGAAACA
1 ATGAATGAAACA
69260 TCTGTTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.52, C:0.07, G:0.24, T:0.17
Consensus pattern (15 bp):
ATGAATGAAACAGAG
Found at i:69356 original size:15 final size:15
Alignment explanation
Indices: 69336--69368 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
69326 GCTAAGTCTA
69336 AAATTGACATGAATG
1 AAATTGACATGAATG
*
69351 AAATTGAGATGAATG
1 AAATTGACATGAATG
69366 AAA
1 AAA
69369 CATCTGTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.03, G:0.21, T:0.24
Consensus pattern (15 bp):
AAATTGACATGAATG
Found at i:69375 original size:111 final size:111
Alignment explanation
Indices: 69233--69440 Score: 326
Period size: 111 Copynumber: 1.9 Consensus size: 111
69223 TGAAACAGAG
* * *
69233 ATGAATGAAACAGTGATGAATGAAACATCTGTTCAAGTTGTCCACAACTCTCAAAGCCATGAAAA
1 ATGAATGAAACAGAGATGAATGAAACATCTGTTCAAGTTATCCAAAACTCTCAAAGCCATGAAAA
* *
69298 ACGTAAGGAGAATGACACCAGGAAAGAAGCTAAGTCTAAAATTGAC
66 ACGTAAGGAGAATAACACCAGAAAAGAAGCTAAGTCTAAAATTGAC
** *
69344 ATGAATGAAATTGAGATGAATGAAACATCTGTTCAAGTTATCCAAAACTCTCAAAGCCGTGAAAA
1 ATGAATGAAACAGAGATGAATGAAACATCTGTTCAAGTTATCCAAAACTCTCAAAGCCATGAAAA
**
69409 ACGTACTGAGAATAACACCAGAAAAGAAGCTA
66 ACGTAAGGAGAATAACACCAGAAAAGAAGCTA
69441 CCACCCCTGC
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
111 87 1.00
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (111 bp):
ATGAATGAAACAGAGATGAATGAAACATCTGTTCAAGTTATCCAAAACTCTCAAAGCCATGAAAA
ACGTAAGGAGAATAACACCAGAAAAGAAGCTAAGTCTAAAATTGAC
Found at i:69778 original size:18 final size:18
Alignment explanation
Indices: 69748--69790 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
69738 ATTTTCCCCT
69748 TTTTAATAACCTAATTAA
1 TTTTAATAACCTAATTAA
*
69766 TATTTAA-AACCTACTTAA
1 T-TTTAATAACCTAATTAA
69784 TTTTAAT
1 TTTTAAT
69791 TTTCTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.23
18 12 0.55
19 5 0.23
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTTAATAACCTAATTAA
Found at i:77280 original size:22 final size:23
Alignment explanation
Indices: 77238--77286 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
77228 TTACTTAATA
*
77238 AAAAAGGTGCCTATTTACTTC-C
1 AAAAAGGTGCCTATTGACTTCAC
* *
77260 AAAAAGGTGCTTATTGGCTTCAC
1 AAAAAGGTGCCTATTGACTTCAC
77283 AAAA
1 AAAA
77287 GGTTATCCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (23 bp):
AAAAAGGTGCCTATTGACTTCAC
Found at i:81225 original size:30 final size:30
Alignment explanation
Indices: 81191--81260 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
81181 GCCATGAATA
81191 AACAAGAAATAAATAAG-AAATTACATGAGG
1 AACAAGAAATAAA-AAGTAAATTACATGAGG
* * * *
81221 AACAAGAATTGAAGAGTAAATTACATGGGG
1 AACAAGAAATAAAAAGTAAATTACATGAGG
*
81251 AACAATAAAT
1 AACAAGAAAT
81261 TTGATGGAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.19
Consensus pattern (30 bp):
AACAAGAAATAAAAAGTAAATTACATGAGG
Found at i:86103 original size:2 final size:2
Alignment explanation
Indices: 86096--86134 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
86086 TTACTATAAG
*
86096 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86135 CTTTGTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.