Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010614.1 Corchorus capsularis cultivar CVL-1 contig10635, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27429

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1744--1788
23
2.0
23
100
0
90
13
17
22
46
1.83
5515--5569
21
2.6
21
100
0
110
30
21
21
25
1.98
5874--5974
31
3.3
31
75
5
107
32
19
11
35
1.89
6767--6866
31
3.3
30
73
5
94
36
13
19
32
1.89
7157--7187
2
15.5
2
100
0
62
51
0
0
48
1.00
9638--9749
24
4.5
24
70
6
89
40
28
18
12
1.87
9850--9905
18
3.2
18
84
2
60
48
19
23
8
1.77
10024--10128
47
2.3
46
83
3
122
40
30
14
15
1.87
10045--10148
47
2.2
47
78
10
113
39
26
14
19
1.90
10178--10220
19
2.3
18
84
4
50
48
20
13
16
1.80
11986--12011
1
26.0
1
100
0
52
100
0
0
0
0.00
17042--17084
21
2.0
22
90
4
70
6
16
0
76
0.99
23565--23617
21
2.5
21
90
0
79
16
5
37
39
1.73
25425--25462
19
2.1
18
90
5
58
31
21
2
44
1.66
25441--25472
11
2.9
11
90
0
55
43
18
0
37
1.51
25413--25472
22
2.9
22
76
19
65
36
18
3
41
1.67
25635--25678
20
2.1
22
87
8
65
63
4
6
25
1.38

Tables:   1

The End!