Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010615.1 Corchorus capsularis cultivar CVL-1 contig10636, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4056
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34


Found at i:2372 original size:11 final size:11

Alignment explanation


    Indices: 2356--2387  Score: 55
    Period size: 11  Copynumber: 2.9  Consensus size: 11

       2346 GAAGTTCGTG

                       
       2356 TTTGAAGATTA
          1 TTTGAAGATTA

                     * 
       2367 TTTGAAGATAA
          1 TTTGAAGATTA

                      
       2378 TTTGAAGATT
          1 TTTGAAGATT

       2388 TGAAGACAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  11   19  1.00

ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44


Consensus pattern (11 bp):   
TTTGAAGATTA

Found at i:3762 original size:6 final size:6

Alignment explanation


    Indices: 3751--3789  Score: 62
    Period size: 6  Copynumber: 6.7  Consensus size: 6

       3741 ATTAATTTGC

                            *                             
       3751 TTTAGA TTTAGA TTCAGA TTTAGA TTTAGA TTTA-A TTTA
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTTA

       3790 TATTGAATTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   5    5  0.16
   6   26  0.84

ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51


Consensus pattern (6 bp):   
TTTAGA

Done.