Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010618.1 Corchorus capsularis cultivar CVL-1 contig10639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26965

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81--303
112
2.0
112
94
0
392
26
30
22
20
1.98
3134--3202
18
3.8
18
86
0
102
11
11
37
39
1.78
3124--3199
36
2.1
36
92
0
125
10
13
38
38
1.79
4682--4776
26
3.5
26
73
17
93
27
17
3
51
1.61
4707--4758
16
3.2
16
80
0
68
28
13
1
55
1.49
4764--4820
16
3.6
16
73
17
55
28
19
5
47
1.71
4681--4860
57
3.1
57
91
0
297
27
18
3
50
1.65
5308--5338
15
2.1
15
93
0
53
38
12
3
45
1.59
5287--5424
52
2.7
52
94
0
231
31
15
5
46
1.70
5361--5389
15
1.9
15
100
0
58
27
13
10
48
1.75
5376--5511
37
3.8
37
77
16
176
30
17
5
47
1.70
6318--6811
50
9.7
50
88
2
711
36
13
5
44
1.68
6318--6809
152
3.2
151
93
1
797
35
14
5
44
1.68
6318--6811
101
4.9
101
89
3
719
36
13
5
44
1.68
9214--9282
27
2.6
27
88
6
104
34
21
23
20
1.96
12681--12729
22
2.3
21
82
6
55
34
4
2
59
1.28
19120--19159
21
2.0
21
85
5
55
45
17
17
20
1.86
23747--23798
23
2.3
23
93
0
86
32
1
9
55
1.43
23758--23801
13
3.6
13
76
17
58
29
2
11
56
1.46
23857--23887
13
2.4
13
100
0
62
67
0
6
25
1.14
25066--25091
2
13.0
2
100
0
52
50
0
0
50
1.00
26259--26306
23
2.0
24
84
11
64
22
33
10
33
1.88

Tables:   1

The End!