Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010619.1 Corchorus capsularis cultivar CVL-1 contig10640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10966
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:781 original size:5 final size:5
Alignment explanation
Indices: 771--799 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
761 TTCATTTATC
771 TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
800 TTTACACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (5 bp):
TTTTG
Found at i:2434 original size:19 final size:20
Alignment explanation
Indices: 2410--2449 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
2400 AATGTCATTC
2410 AAGAAATATA-TTTAAAAAA
1 AAGAAATATATTTTAAAAAA
2429 AAGAAATATATTTTAAAAAA
1 AAGAAATATATTTTAAAAAA
2449 A
1 A
2450 CTAATATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (20 bp):
AAGAAATATATTTTAAAAAA
Found at i:2455 original size:19 final size:19
Alignment explanation
Indices: 2413--2458 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
2403 GTCATTCAAG
*
2413 AAATATATTTAAAAAAAAG
1 AAATATATTTAAAAAAAAC
*
2432 AAATATATTTTAAAAAAAC
1 AAATATATTTAAAAAAAAC
*
2451 TAATATAT
1 AAATATAT
2459 CAAATTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATATATTTAAAAAAAAC
Found at i:2552 original size:39 final size:39
Alignment explanation
Indices: 2509--2630 Score: 101
Period size: 39 Copynumber: 3.1 Consensus size: 39
2499 TTCAATTATA
2509 TAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGG
1 TAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGG
* * * * * * *
2548 TAAAATATGATAGTTATAAG--GA-TACTAGAT-TTAATTAT-A
1 TAAAA-AT-AGAGTTTTTAGTTGAGTA--AAATAGTAA-AATGG
2587 TAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGG
1 TAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGG
2626 TAAAA
1 TAAAA
2631 TAAAAATTAG
Statistics
Matches: 59, Mismatches: 14, Indels: 20
0.63 0.15 0.22
Matches are distributed among these distances:
37 8 0.14
38 9 0.15
39 25 0.42
40 9 0.15
41 8 0.14
ACGTcount: A:0.48, C:0.01, G:0.17, T:0.34
Consensus pattern (39 bp):
TAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGG
Found at i:2632 original size:38 final size:38
Alignment explanation
Indices: 2511--2632 Score: 92
Period size: 38 Copynumber: 3.2 Consensus size: 38
2501 CAATTATATA
2511 AAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGT
1 AAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGT
* * * * * *
2549 AAAATATGATAGTTATAAG--GA-TACTAGAT-TTAATTAT-AT
1 AAAATA-G--AGTTTTTAGTTGAGTA--AAATAGTAA-AATGGT
2588 AAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGT
1 -AAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGT
2627 AAAATA
1 AAAATA
2633 AAAATTAGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 24
0.62 0.12 0.25
Matches are distributed among these distances:
37 7 0.12
38 19 0.32
39 14 0.23
40 13 0.22
41 7 0.12
ACGTcount: A:0.48, C:0.01, G:0.17, T:0.34
Consensus pattern (38 bp):
AAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGT
Found at i:2691 original size:80 final size:78
Alignment explanation
Indices: 2491--2702 Score: 327
Period size: 78 Copynumber: 2.7 Consensus size: 78
2481 AAATATACTC
* *
2491 ATATTAGATTCAATTATATAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGTAAAATAT
1 ATATTAGATTTAATTATATAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGTAAAATAA
* *
2556 GATAGTTATAAGG
66 AATAGTTATAAAG
*
2569 ATACTAGATTTAATTATATAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGTAAAATAA
1 ATATTAGATTTAATTATATAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGTAAAAT-A
2634 AAATTAGTTATAAAG
65 AAA-TAGTTATAAAG
* *
2649 ATATTAAATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTA-TAAAA
1 ATATTAGATTTAATTATATAAAAATAGAGTTTTTAGTTGAGTAAAA-TAGTAAAA
2703 ATCTAAACAA
Statistics
Matches: 123, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 61 0.50
79 2 0.02
80 58 0.47
81 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.14, T:0.36
Consensus pattern (78 bp):
ATATTAGATTTAATTATATAAAAATAGAGTTTTTAGTTGAGTAAAATAGTAAAATGGTAAAATAA
AATAGTTATAAAG
Found at i:2807 original size:6 final size:6
Alignment explanation
Indices: 2790--2821 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
2780 GTACTTTTTA
2790 ATATAG -TATAG ATATAG ATATAG ATATAG ATA
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATA
2822 AATGAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
ATATAG
Found at i:3359 original size:28 final size:28
Alignment explanation
Indices: 3327--3383 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
3317 TAGTTATCTC
3327 TACCATAAAAAATAAATAGATTGGAACT
1 TACCATAAAAAATAAATAGATTGGAACT
* *
3355 TACCATAAAAAATACATAGATTTGAACT
1 TACCATAAAAAATAAATAGATTGGAACT
3383 T
1 T
3384 TTAGTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (28 bp):
TACCATAAAAAATAAATAGATTGGAACT
Found at i:3772 original size:17 final size:17
Alignment explanation
Indices: 3752--3784 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
3742 TATAATTTAT
3752 CTTTAA-AAAATTATATA
1 CTTTAATAAAA-TATATA
3769 CTTTAATAAAATATAT
1 CTTTAATAAAATATAT
3785 GGAAACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
CTTTAATAAAATATATA
Found at i:4085 original size:19 final size:19
Alignment explanation
Indices: 4061--4098 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
4051 ATCTCCAAGC
4061 TAATTACTAACGTGAAACA
1 TAATTACTAACGTGAAACA
4080 TAATTACTAACGTGAAACA
1 TAATTACTAACGTGAAACA
4099 AGCTAAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
TAATTACTAACGTGAAACA
Found at i:4252 original size:22 final size:23
Alignment explanation
Indices: 4217--4263 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
4207 GTAGTTAATC
*
4217 ATAAATTAACTAATTAAA-ACTA
1 ATAAACTAACTAATTAAATACTA
*
4239 ATAAACTAAGTAATTAAATACTA
1 ATAAACTAACTAATTAAATACTA
4262 AT
1 AT
4264 TAATTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (23 bp):
ATAAACTAACTAATTAAATACTA
Found at i:4275 original size:22 final size:22
Alignment explanation
Indices: 4228--4277 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
4218 TAAATTAACT
*
4228 AATTAAAACTAATAAACTAAGT
1 AATTAAAACTAATAAACTAAGA
* *
4250 AATTAAATACTAATTAATTAA-A
1 AATTAAA-ACTAATAAACTAAGA
4272 AATTAA
1 AATTAA
4278 TTTTTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (22 bp):
AATTAAAACTAATAAACTAAGA
Found at i:4278 original size:15 final size:15
Alignment explanation
Indices: 4241--4279 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
4231 TAAAACTAAT
*
4241 AAACTAAGTAATTAA
1 AAACTAATTAATTAA
*
4256 ATACTAATTAATTAA
1 AAACTAATTAATTAA
*
4271 AAATTAATT
1 AAACTAATT
4280 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (15 bp):
AAACTAATTAATTAA
Found at i:4543 original size:20 final size:21
Alignment explanation
Indices: 4515--4557 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
4505 CAAAATTGTA
4515 AAAAGGGGGGCGATATTTAGC
1 AAAAGGGGGGCGATATTTAGC
*
4536 AAAA-GGGGGCGGTATTTAGC
1 AAAAGGGGGGCGATATTTAGC
4556 AA
1 AA
4558 TTCAGAATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.35, C:0.09, G:0.37, T:0.19
Consensus pattern (21 bp):
AAAAGGGGGGCGATATTTAGC
Found at i:7940 original size:32 final size:32
Alignment explanation
Indices: 7899--7970 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 32
7889 TTTGGTCTAA
7899 CCGCCCCATGAGGGCGGCCTGCCGTGGCAAAG
1 CCGCCCCATGAGGGCGGCCTGCCGTGGCAAAG
*
7931 CCGCCCCATGAGGGCGGCCTGCCGTGGCGAAG
1 CCGCCCCATGAGGGCGGCCTGCCGTGGCAAAG
7963 CCGCCCCA
1 CCGCCCCA
7971 GTGGGGAGGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.14, C:0.42, G:0.36, T:0.08
Consensus pattern (32 bp):
CCGCCCCATGAGGGCGGCCTGCCGTGGCAAAG
Found at i:7998 original size:33 final size:33
Alignment explanation
Indices: 7919--8048 Score: 149
Period size: 33 Copynumber: 4.0 Consensus size: 33
7909 AGGGCGGCCT
** * *
7919 GCCGTGGCAAAGCCGCCCCA-TGAGGGCGGC-CT
1 GCCGTGGCTGAGCCGCCCCAGTG-GGGAGGCTCC
7951 GCCGTGGC-GAAGCCGCCCCAGTGGGGAGGCTCC
1 GCCGTGGCTG-AGCCGCCCCAGTGGGGAGGCTCC
* *
7984 GCCGTGGCTGAGCCGTCCTAGTGGGGAGGCTCC
1 GCCGTGGCTGAGCCGCCCCAGTGGGGAGGCTCC
* *
8017 GCCGTGGCTGAGCCGTCCTAGTGGGGAGGCTC
1 GCCGTGGCTGAGCCGCCCCAGTGGGGAGGCTC
8049 AGTGTAAAAG
Statistics
Matches: 89, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
32 24 0.27
33 64 0.72
34 1 0.01
ACGTcount: A:0.12, C:0.33, G:0.42, T:0.14
Consensus pattern (33 bp):
GCCGTGGCTGAGCCGCCCCAGTGGGGAGGCTCC
Found at i:9494 original size:439 final size:436
Alignment explanation
Indices: 8686--10260 Score: 1712
Period size: 439 Copynumber: 3.6 Consensus size: 436
8676 TAAACTAATT
* * *
8686 TTTTTTATTGGTTTATTTATCTAATGATCCTCATACTTTTATGCTTTATGCTATTTAGTCCTTCA
1 TTTTTTATTGGATTATTTATCTAATGATCCTCATACTTTTATGCTTTATGTTATTTAGTCCTTTA
* *
8751 CAATTATAGGTTGGACGATTTAATGCGTTCGCATTTTTTTTGTATTTTTTTCCTATTTGTCCGAT
66 CAATTATAGGTTGGACGATTTAACGCGTTCGCATTTTTTTTCTA-TTTTTTCCTATTTGTCCGAT
8816 TAAGGTGATTCAAGTGT-TCATTAAAAGGTAATTTCATGATCTACAATTTTCATGAAGAACTCAA
130 TAAGGTGATTCAAGTGTCT-ATTAAAAGGTAATTTCATGATCTACAATTTTCATGAAGAACTCAA
* ** *
8880 AAGCCAATTTTAATGTTTTGATTCTAAAACATGCTTTTGAAACTTTGTGGTTTTGATTGCCGGTC
194 AAGCCAATTTTAATGTTTTGATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGCCGGTC
* * * *
8945 AAATGAATATCGTATAATTTTTTGTCCACATGTCCGATTGAAGTTATTGAAGTGTCGGTTAGAAG
259 AATTTAATATCGTATAATTTTTTATCCACATGTCCGATTGAAGTTATTGAAGTGTCGGTTAAAAG
* *
9010 GTTATTGCATGACTTATGACTTTCATGAAGCACCCGAAAGCTAAATTTGATCTACGAGTTTCATG
324 GTTATTGCATGATTTATGACTTTCATGAAGAACCCGAAAGCTAAATTTGATCTACGAGTTTCATG
* *
9075 AAGGGTTTAAAAAGGGCGTTTTTATGTTCAAGATCTCCATTAACAAACA
389 AAGGG-TTCAAAAGGGAGTTTTTATGTTCAAGATCTCCATTAACAAACA
* * *
9124 TTTTTTGTTGGATTATTTATCTAATGATCCTCATACTTTTATGCTTTACGTTATTTAGTCATTTA
1 TTTTTTATTGGATTATTTATCTAATGATCCTCATACTTTTATGCTTTATGTTATTTAGTCCTTTA
9189 CAATTATAGGTTGGACGATTTAACGCGTTCGCATTTATTTTTCTACTTTTTTCCTATTTGTCCGA
66 CAATTATAGGTTGGACGATTTAACGCGTTCGCATTT-TTTTTCTA-TTTTTTCCTATTTGTCCGA
9254 TTAAGGTGATTCAAGTGTCTATTAAAAGGTAATTTCATGATCTACAATTTTCATGAAGAACTCAA
129 TTAAGGTGATTCAAGTGTCTATTAAAAGGTAATTTCATGATCTACAATTTTCATGAAGAACTCAA
* *
9319 AAGCCAATTTTAATATTTTGATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGCCAGTC
194 AAGCCAATTTTAATGTTTTGATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGCCGGTC
* *
9384 AATTTAATATCGTATAATTTTTTATCCACATGTCCGATTGAAGTTATTGAAGTATCGGTCAAAAG
259 AATTTAATATCGTATAATTTTTTATCCACATGTCCGATTGAAGTTATTGAAGTGTCGGTTAAAAG
* * * *
9449 GTTATTGCATGATTTACGACTTTGATGAA-AGACCCGAACGCTAAATTTGATTTACGAGTTTCAT
324 GTTATTGCATGATTTATGACTTTCATGAAGA-ACCCGAAAGCTAAATTTGATCTACGAGTTTCAT
*
9513 GAAGGGTTCAAAAGGGAGTTTTTATGTTCAAAATCTCCATTAACAAACA
388 GAAGGGTTCAAAAGGGAGTTTTTATGTTCAAGATCTCCATTAACAAACA
* * * * * * * *
9562 TTTTCTTATTTGGATTATTTATCAAATAACCCTCATATTTTTCTACTTTATATTACTTAGTCCTT
1 TTTT-TTA-TTGGATTATTTATCTAATGATCCTCATACTTTTATGCTTTATGTTATTTAGTCCTT
* ** * ** * * *
9627 TACAGATTCTATCTT--A--ATCTAAC-ATTTAAG-ATTTTTTTTTTATTCTTTGTTCTATTTGT
64 TACA-ATTATAGGTTGGACGATTTAACGCGTT-CGCATTTTTTTTCTATT-TTT-TCCTATTTGT
* * * * * *
9686 CTGATTAAGTTGATTCATGTGTCTATTAAAAGGTAATTTCATGATATACAACTTTCATGAAGGAC
125 CCGATTAAGGTGATTCAAGTGTCTATTAAAAGGTAATTTCATGATCTACAATTTTCATGAAGAAC
* * * * * * ** *
9751 TCAAAAGCAAAATTTT-ATGTTTTAATTCAAAAAAATGCTTCCTAAATTTGGTCGTTTCAATTGT
190 TCAAAAGC-CAATTTTAATGTTTTGATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGC
* * * * * ** * * * *
9815 TGGTCTATTTAATACCATATAATCTTCGATTCACATGTCCGATTAAAGTTATTCAAGTGCCGGTT
254 CGGTCAATTTAATATCGTATAATTTTTTATCCACATGTCCGATTGAAGTTATTGAAGTGTCGGTT
* * * *
9880 AAAA-GTTACTGTATGATCTATGACTTTCATGAAGAACCCGAAAG-TTAATTTGATCTACGAGTT
319 AAAAGGTTATTGCATGATTTATGACTTTCATGAAGAACCCGAAAGCTAAATTTGATCTACGAGTT
* * * ** *
9943 TCATGAAGGGTTCAAAAGAGAATTTTTATGTTCAAGATATCCATTAGGAAATA
384 TCATGAAGGGTTCAAAAGGGAGTTTTTATGTTCAAGATCTCCATTAACAAACA
* * * * * *
9996 TTTTCTTATTTGAATTAATTATCAAATGA-CGCTCATATTTTTCTATTTTCTATTTTATGTTACT
1 TTTT-TTA-TTGGATTATTTATCTAATGATC-CTCATA-CTTT-TA--TGC---TTTATGTTATT
* * * ** *
10060 TAGTTCTTTACAAATTCTA--TCT-CACTGGATTTAACGC-TTC-TTTTTTATTTTCAATTTTCT
56 TAGTCCTTTAC-AATTATAGGT-TGGAC--GATTTAACGCGTTCGCATTTT-TTTTC--TATT-T
* * * * ** * *
10120 TTGTTCTGTTTGTTCAATTAAGGT-ATTCAAGTGTCTATTAAAAAATAATTTTATGATCTACAAC
113 TT-TCCTATTTGTCCGATTAAGGTGATTCAAGTGTCTATTAAAAGGTAATTTCATGATCTACAAT
* * ** * **
10184 TTTCATGAA-AGACTCAAAAGCTAATTTTCATGTTTCAATTCTAAAAAATACTTTTGAAATTTTT
177 TTTCATGAAGA-ACTCAAAAGCCAATTTTAATGTTTTGATTCTAAAAAATGCTTCCGAAA-TTTT
* *
10248 GTGATTTCGATTG
240 GTGGTTTTGATTG
10261 ATAATCTATT
Statistics
Matches: 973, Mismatches: 130, Indels: 59
0.84 0.11 0.05
Matches are distributed among these distances:
433 1 0.00
434 97 0.10
435 46 0.05
436 178 0.18
437 13 0.01
438 140 0.14
439 274 0.28
440 52 0.05
441 34 0.03
442 1 0.00
444 4 0.00
445 18 0.02
446 78 0.08
447 37 0.04
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.42
Consensus pattern (436 bp):
TTTTTTATTGGATTATTTATCTAATGATCCTCATACTTTTATGCTTTATGTTATTTAGTCCTTTA
CAATTATAGGTTGGACGATTTAACGCGTTCGCATTTTTTTTCTATTTTTTCCTATTTGTCCGATT
AAGGTGATTCAAGTGTCTATTAAAAGGTAATTTCATGATCTACAATTTTCATGAAGAACTCAAAA
GCCAATTTTAATGTTTTGATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGCCGGTCAA
TTTAATATCGTATAATTTTTTATCCACATGTCCGATTGAAGTTATTGAAGTGTCGGTTAAAAGGT
TATTGCATGATTTATGACTTTCATGAAGAACCCGAAAGCTAAATTTGATCTACGAGTTTCATGAA
GGGTTCAAAAGGGAGTTTTTATGTTCAAGATCTCCATTAACAAACA
Found at i:10950 original size:32 final size:33
Alignment explanation
Indices: 10889--10964 Score: 93
Period size: 32 Copynumber: 2.3 Consensus size: 33
10879 AGGCGTCCCA
* *
10889 CTGGGGCGGCTTCACCATGGGCAGGCCGCCCTC-
1 CTGGGGCGGCTTCACCATCGGCAGACCGCCC-CG
*
10922 CTGGGGCGGCTTCGCCA-CGGCAGACCGCCCCG
1 CTGGGGCGGCTTCACCATCGGCAGACCGCCCCG
*
10954 GTGGGGCGGCT
1 CTGGGGCGGCT
10965 CG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 1 0.03
32 21 0.55
33 16 0.42
ACGTcount: A:0.08, C:0.38, G:0.41, T:0.13
Consensus pattern (33 bp):
CTGGGGCGGCTTCACCATCGGCAGACCGCCCCG
Done.