Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010621.1 Corchorus capsularis cultivar CVL-1 contig10642, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38630

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--181
30
3.6
29
79
6
97
36
16
29
17
1.92
3543--3877
166
2.0
166
100
0
670
38
17
15
28
1.90
7713--7742
2
15.0
2
100
0
60
50
0
0
50
1.00
12248--12297
6
8.5
6
95
4
93
52
16
0
32
1.44
14710--14811
33
3.1
32
82
8
107
8
25
44
21
1.81
21267--21329
23
2.7
23
78
11
67
9
25
46
19
1.80
21291--21355
33
2.0
33
87
6
96
9
27
43
20
1.82
25758--25813
15
3.9
15
74
9
62
16
21
5
57
1.59
25794--25881
21
4.1
21
76
7
79
20
22
7
48
1.75
25871--25950
35
2.3
35
86
0
106
20
21
8
50
1.75
25941--25989
21
2.3
22
82
10
66
16
20
2
61
1.44
26107--26172
31
2.1
31
88
8
98
25
16
6
51
1.67
26204--26409
47
4.4
47
90
2
301
23
18
8
48
1.76
26283--26361
26
3.2
26
65
17
78
24
15
8
51
1.71
27064--27319
51
5.1
51
73
8
211
34
17
5
42
1.72
27063--27319
101
2.5
101
89
0
388
34
17
5
42
1.72
30048--30127
27
2.9
27
86
3
106
36
25
22
16
1.94
31176--31236
28
2.2
28
100
0
122
37
11
39
11
1.78
35150--35176
2
13.5
2
100
0
54
48
0
0
51
1.00
35188--35241
27
2.0
26
89
3
81
42
24
5
27
1.76
35753--35828
36
2.1
36
95
0
134
30
21
18
30
1.97

Tables:   1

The End!