Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010626.1 Corchorus capsularis cultivar CVL-1 contig10647, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7805
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:711 original size:3 final size:3

Alignment explanation


    Indices: 703--731  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        693 TGGGTTTTTG

                                                  
        703 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

        732 TTTTTTAAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTC

Found at i:4859 original size:17 final size:17

Alignment explanation


    Indices: 4837--4871  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       4827 TTTCTTAATG

                    *        
       4837 TTTTTATTGATACTTTT
          1 TTTTTATTCATACTTTT

                             
       4854 TTTTTATTCATACTTTT
          1 TTTTTATTCATACTTTT

             
       4871 T
          1 T

       4872 CAATTAAGTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71


Consensus pattern (17 bp):   
TTTTTATTCATACTTTT
Done.