genome.fa.s10627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010627.1 Corchorus capsularis cultivar CVL-1 contig10648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118036

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5335--5424	45	2.0	45	97	0	171	32	20	23	24	1.98
6252--6674	158	2.6	164	85	7	554	26	15	15	41	1.88
9142--9205	30	2.1	30	94	0	110	25	39	28	7	1.83
15726--15786	30	2.0	30	93	0	104	24	37	31	6	1.81
18391--18438	22	2.2	22	81	3	62	52	4	16	27	1.62
18443--18482	21	2.0	21	85	5	55	37	12	20	30	1.89
21262--21295	10	3.4	10	100	0	68	23	8	20	47	1.78
22822--22866	23	1.9	24	86	4	65	53	24	2	20	1.57
23228--23258	15	2.0	16	93	6	55	80	6	6	6	1.02
23521--23572	10	4.8	10	75	15	50	15	26	48	9	1.76
36716--36752	17	2.2	17	95	0	65	37	21	18	21	1.94
41077--41142	31	2.1	31	86	5	89	28	22	4	43	1.73
41264--41361	38	2.6	37	80	3	124	12	19	10	58	1.62
42540--42743	22	9.3	22	71	13	107	33	9	17	38	1.83
42536--42688	44	3.5	43	80	9	168	35	11	16	37	1.84
42572--42666	42	2.2	43	90	7	149	36	12	15	34	1.86
42779--43176	22	17.9	22	68	13	145	39	10	16	34	1.82
42790--42913	66	1.9	66	83	6	162	33	8	20	37	1.84
43273--43744	22	21.6	22	69	12	179	37	10	15	36	1.82
43467--43518	23	2.3	23	82	0	68	42	5	15	36	1.71
43617--43702	45	1.9	45	83	4	111	33	11	15	39	1.83
44877--44959	36	2.3	36	93	0	139	28	21	8	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44877--44971	36	2.8	34	87	7	115	29	21	7	42	1.80
45008--45281	36	7.7	36	87	3	378	24	23	10	41	1.85
45277--45383	11	9.7	11	89	0	169	6	28	9	56	1.56
45437--45529	36	2.6	36	91	0	141	25	16	9	48	1.76
45532--45740	36	5.7	36	83	6	240	23	22	10	44	1.83
45581--45794	108	2.0	107	79	4	234	24	21	9	44	1.82
55122--55188	33	2.0	33	94	0	116	35	7	16	40	1.77
62962--62997	18	2.0	18	94	0	63	30	27	25	16	1.97
65652--65676	2	12.5	2	100	0	50	48	0	0	52	1.00
69190--69250	29	2.1	30	85	11	83	49	4	0	45	1.23
70381--70452	31	2.3	31	77	13	85	25	4	9	61	1.45
70776--70844	34	2.0	34	100	0	138	39	14	20	26	1.91
70919--70997	32	2.5	32	73	6	81	44	31	15	8	1.77
71211--71397	27	7.3	26	67	17	86	42	9	3	43	1.55
71746--72010	22	12.0	22	74	10	168	36	9	17	36	1.83
71756--71884	69	1.9	68	83	4	170	39	8	18	33	1.81
72224--72248	2	12.5	2	100	0	50	48	0	0	52	1.00
72643--72681	20	1.9	21	89	5	62	7	0	38	53	1.30
73434--73490	29	2.0	29	100	0	114	31	3	28	36	1.74
75646--75685	19	2.1	19	85	0	53	17	10	27	45	1.80
77512--77548	17	2.1	18	95	5	67	27	10	35	27	1.90
79951--80362	183	2.2	183	80	5	456	35	18	16	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90865--90901	17	2.1	18	95	5	67	27	10	35	27	1.90
91253--91615	156	2.3	155	77	8	346	34	18	17	30	1.94
92885--92937	24	2.2	25	86	3	72	52	0	13	33	1.40
105332--105359	7	4.0	7	100	0	56	42	0	0	57	0.99
109721--109788	12	5.5	12	87	6	100	38	16	23	22	1.93
109721--109788	25	2.7	25	97	0	127	38	16	23	22	1.93
111058--111092	18	1.9	18	88	0	52	40	11	20	28	1.87

Tables:   1

The End!