Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010628.1 Corchorus capsularis cultivar CVL-1 contig10649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56203

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--95
32
2.9
32
95
0
161
15
37
37
9
1.81
12--140
32
4.0
33
87
5
124
14
34
38
12
1.84
419--581
60
2.7
59
81
12
215
35
18
19
26
1.95
610--777
31
5.5
31
71
16
136
27
19
19
32
1.96
610--773
60
2.7
60
91
0
265
27
19
19
33
1.96
1064--1096
2
16.5
2
100
0
66
48
0
0
51
1.00
2493--2632
46
3.1
45
81
7
167
30
15
24
29
1.96
2794--2914
36
3.4
36
88
2
172
25
22
25
26
2.00
3211--3442
45
5.2
46
83
7
289
28
20
25
25
1.99
3219--3442
90
2.5
90
89
2
326
28
19
25
26
1.99
3480--3513
17
2.0
17
100
0
68
41
17
17
23
1.90
3500--3588
37
2.4
37
92
0
142
35
19
26
17
1.94
3635--3798
45
3.6
44
76
9
161
29
17
25
28
1.97
3631--3798
91
1.9
89
82
8
214
29
17
24
27
1.97
3882--3991
49
2.2
49
82
3
123
37
28
12
21
1.90
4307--4450
65
2.2
65
87
1
198
27
14
24
34
1.94
4474--4710
110
2.2
110
86
3
327
33
22
21
22
1.97
5095--5130
18
2.0
18
94
0
63
19
33
16
30
1.94
5953--5983
2
15.5
2
100
0
62
48
0
0
51
1.00
9873--9908
1
36.0
1
94
0
63
97
2
0
0
0.18
9916--9942
4
6.8
4
100
0
54
74
25
0
0
0.83
9919--9959
13
3.2
13
86
3
57
68
21
2
7
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14340--14368
14
2.0
15
93
6
51
75
6
6
10
1.17
14340--14369
15
2.0
15
93
0
51
76
6
6
10
1.15
23159--23184
12
2.2
12
100
0
52
42
23
15
19
1.89
23615--23762
22
6.8
22
71
14
94
39
14
7
37
1.75
23678--23798
22
5.6
21
74
9
93
34
17
7
40
1.78
23658--23800
44
3.3
44
79
8
118
35
15
8
40
1.77
23723--23798
20
3.5
20
80
7
62
31
17
7
43
1.77
24054--24146
45
2.1
45
93
0
159
32
13
12
40
1.83
24584--24608
2
12.5
2
100
0
50
52
0
0
48
1.00
25599--25643
21
2.1
21
83
0
54
15
33
11
40
1.83
25882--25987
33
3.2
33
78
6
117
9
38
38
13
1.77
30365--30431
18
3.9
16
81
16
64
56
13
1
28
1.46
30381--30445
10
6.9
10
73
16
50
55
15
1
27
1.49
30375--30431
8
6.8
8
79
16
62
59
14
0
26
1.35
30365--30446
36
2.2
37
81
10
96
54
13
2
29
1.51
35156--35449
146
2.0
146
100
0
588
28
21
16
33
1.95
38820--38857
17
2.4
16
83
12
51
23
2
0
73
0.95
43556--43586
3
10.3
3
100
0
62
67
0
32
0
0.91
44319--44356
11
3.5
11
85
10
51
57
2
0
39
1.12
44661--44714
27
2.0
27
92
0
90
31
14
3
50
1.61
44725--44752
14
2.0
14
100
0
56
71
7
0
21
1.09
47672--47781
32
3.4
32
94
0
184
39
36
10
14
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51590--51631
2
21.5
2
95
4
77
50
0
0
50
1.00
55941--56202
22
12.3
22
73
15
180
16
20
7
55
1.65

Tables:   1

The End!