Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010629.1 Corchorus capsularis cultivar CVL-1 contig10650, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14316

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--423
50
3.3
50
82
5
214
39
11
5
44
1.63
2542--2673
27
4.9
27
90
2
194
41
23
18
15
1.89
5195--5247
21
2.5
22
76
20
58
41
9
15
33
1.79
5193--5529
22
15.5
22
69
11
196
37
10
18
33
1.85
5304--5401
46
2.2
41
82
10
106
35
7
18
38
1.78
5425--5482
21
2.7
22
78
5
64
36
10
18
34
1.85
5542--5648
22
4.8
22
76
8
90
35
8
20
35
1.83
5467--5609
74
1.9
74
84
2
189
32
9
21
36
1.86
5676--5714
12
3.6
12
80
19
50
25
28
15
30
1.96
5825--5850
10
2.6
10
100
0
52
38
23
7
30
1.83
7222--7251
12
2.5
12
88
0
51
26
20
16
36
1.93
7408--7468
22
2.8
22
82
0
68
39
6
13
40
1.70
9890--10377
167
2.9
165
83
2
618
38
17
14
29
1.89
10436--10485
2
25.5
2
83
4
66
42
0
0
58
0.98
10433--10483
8
6.2
8
90
4
75
41
0
0
58
0.98
10873--10960
45
2.0
45
90
4
142
29
20
17
32
1.95
12903--12965
31
2.0
31
100
0
126
28
11
15
44
1.81

Tables:   1

The End!