Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001063.1 Corchorus capsularis cultivar CVL-1 contig01063, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2748
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:691 original size:22 final size:22

Alignment explanation


    Indices: 641--693  Score: 67
    Period size: 21  Copynumber: 2.5  Consensus size: 22

        631 TGAGTTTGAT

                                  
        641 TTAAC-TTATTTTTTTCTTAAA
          1 TTAACTTTATTTTTTTCTTAAA

                *                  
        662 -TAATTTTATTTTTTTC-TAATA
          1 TTAACTTTATTTTTTTCTTAA-A

                       
        683 TTAACTTTATT
          1 TTAACTTTATT

        694 GGAAATTGAT


Statistics
Matches: 27,  Mismatches: 2, Indels: 5
        0.79            0.06        0.15

Matches are distributed among these distances:
  20    6  0.22
  21   12  0.44
  22    9  0.33

ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64


Consensus pattern (22 bp):   
TTAACTTTATTTTTTTCTTAAA
Done.