Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010631.1 Corchorus capsularis cultivar CVL-1 contig10652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92163

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2169--2205
19
1.9
19
89
10
58
59
8
10
21
1.56
2689--3064
22
17.1
22
74
14
228
55
5
19
19
1.63
2694--3050
43
8.1
42
76
10
295
54
5
19
19
1.64
4410--4442
17
1.9
17
100
0
66
42
9
18
30
1.81
5677--5735
30
2.0
30
90
6
93
22
30
16
30
1.96
6114--6199
33
2.6
33
86
0
118
45
15
6
32
1.72
6214--6310
33
2.9
33
81
0
122
43
21
10
24
1.84
7918--7951
8
4.1
8
85
7
50
23
2
14
58
1.50
15553--15924
190
2.0
189
82
5
457
33
19
3
43
1.68
23933--23963
11
2.8
11
100
0
62
16
19
0
64
1.29
25296--25362
33
2.0
33
97
0
125
26
19
14
38
1.91
31044--31358
129
2.5
128
82
5
386
21
25
15
36
1.93
31037--31356
63
5.0
64
81
7
357
21
25
15
37
1.93
32337--32361
2
12.5
2
100
0
50
52
0
0
48
1.00
32848--32914
33
2.0
33
97
0
125
25
32
19
22
1.97
33664--33698
1
35.0
1
100
0
70
100
0
0
0
0.00
38360--38447
29
2.9
29
89
6
131
43
6
17
32
1.75
43825--43853
1
29.0
1
100
0
58
100
0
0
0
0.00
50714--50748
17
2.1
17
94
0
61
17
14
31
37
1.89
50794--50832
21
1.9
21
89
5
62
38
7
5
48
1.54
52922--53083
79
2.1
79
96
0
297
30
25
15
28
1.96
53857--53945
21
4.3
20
78
7
88
20
20
7
51
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53940--54298
22
16.1
22
72
16
181
18
21
6
54
1.65
53939--54276
44
7.6
44
73
15
223
17
20
6
55
1.64
54000--54055
15
3.9
15
68
17
55
16
25
5
53
1.63
54034--54279
21
11.3
21
70
16
121
17
19
6
56
1.63
54156--54205
24
2.0
25
81
11
59
18
14
4
64
1.44
54482--54525
22
1.9
24
90
9
74
31
20
4
43
1.72
54608--54723
56
2.1
56
90
3
182
25
18
7
48
1.74
55657--55685
10
2.7
11
94
5
51
31
27
0
41
1.56
57874--57927
22
2.5
21
80
14
56
14
5
5
74
1.19
58362--58431
28
2.5
28
86
2
88
47
20
17
15
1.83
67397--67455
30
1.9
31
82
3
75
13
25
25
35
1.93
70967--71001
15
2.3
15
90
0
52
48
31
5
14
1.67
72032--72072
6
6.8
6
94
0
64
80
0
19
0
0.71
72028--72071
11
4.0
11
82
8
54
79
0
20
0
0.73
73741--73786
17
2.7
17
96
0
83
10
15
26
47
1.78
73722--73796
17
4.4
17
81
9
82
12
21
26
40
1.88
73740--73806
34
2.0
34
85
5
91
11
13
29
44
1.79
75023--75094
30
2.4
30
97
0
135
38
15
11
34
1.83
75025--75105
30
2.7
30
90
1
101
46
13
8
30
1.73
82337--82371
12
2.6
14
86
13
56
5
5
11
77
1.12
84591--84639
21
2.3
21
82
0
62
24
42
24
8
1.81
86424--86454
6
5.2
6
96
0
53
19
19
32
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87545--87584
21
1.9
21
84
0
53
30
25
25
20
1.99
90193--90265
28
2.6
28
97
0
137
13
21
6
57
1.60
90271--90451
21
8.4
21
71
8
125
21
19
5
53
1.65
90121--90205
43
2.0
42
83
6
107
20
18
7
54
1.67
90718--90926
55
3.8
55
94
0
355
24
18
7
50
1.72
90892--90963
36
2.0
37
94
2
128
23
18
5
52
1.66
90837--91006
92
1.9
91
94
1
304
24
18
5
51
1.67

Tables:   1

The End!