Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010635.1 Corchorus capsularis cultivar CVL-1 contig10656, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42098

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5690--5716
13
2.1
13
100
0
54
44
14
7
33
1.73
7747--7883
67
2.0
67
97
0
256
25
14
24
35
1.94
10009--10067
30
2.0
30
83
12
77
22
38
28
10
1.86
13729--13755
13
2.1
13
100
0
54
44
14
7
33
1.73
15230--15272
17
2.6
16
85
10
59
20
23
20
34
1.96
15223--15280
17
3.4
16
81
9
53
24
20
18
36
1.95
15341--15378
17
2.3
17
86
4
51
63
2
0
34
1.09
16051--16097
18
2.6
18
100
0
94
53
23
6
17
1.66
18636--18668
6
5.5
6
92
0
57
18
12
0
69
1.18
18758--18829
32
2.2
33
85
2
110
34
1
6
56
1.35
23285--23349
28
2.4
28
81
2
78
21
9
24
44
1.81
23700--23740
15
2.8
15
85
10
50
7
12
0
80
0.90
23700--23725
5
5.2
5
100
0
52
0
19
0
80
0.71
27068--27324
105
2.5
104
88
6
373
39
8
10
41
1.69
40465--40532
29
2.6
25
80
17
84
19
20
5
54
1.64
40848--40920
20
3.8
20
68
18
55
19
4
20
56
1.58
41139--41175
20
1.9
20
88
5
58
32
0
0
67
0.91
41555--41597
22
2.0
22
100
0
86
32
4
18
44
1.71
41558--41605
22
2.2
22
88
0
69
35
4
16
43
1.67
41962--41992
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!