Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010640.1 Corchorus capsularis cultivar CVL-1 contig10661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6480
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33


Found at i:2996 original size:13 final size:13

Alignment explanation


    Indices: 2978--3003  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2968 GTTTTGTGCC

                         
       2978 CCTGAATTTGCTA
          1 CCTGAATTTGCTA

                         
       2991 CCTGAATTTGCTA
          1 CCTGAATTTGCTA

       3004 ACTGTTTTGT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38


Consensus pattern (13 bp):   
CCTGAATTTGCTA
Done.