Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010641.1 Corchorus capsularis cultivar CVL-1 contig10662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1878
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31


Found at i:1291 original size:12 final size:12

Alignment explanation


    Indices: 1254--1294  Score: 55
    Period size: 12  Copynumber: 3.4  Consensus size: 12

       1244 TAGGATATTG

                        
       1254 TATCTAAATCTA
          1 TATCTAAATCTA

            *     *     
       1266 AATCTACATCTA
          1 TATCTAAATCTA

                     *  
       1278 TATCTAAATTTA
          1 TATCTAAATCTA

                 
       1290 TATCT
          1 TATCT

       1295 GCATCTAAAC


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44


Consensus pattern (12 bp):   
TATCTAAATCTA

Found at i:1294 original size:18 final size:18

Alignment explanation


    Indices: 1254--1294  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1244 TAGGATATTG

                              
       1254 TATCTAAATCTAAATCTA
          1 TATCTAAATCTAAATCTA

            *     *        *  
       1272 CATCTATATCTAAATTTA
          1 TATCTAAATCTAAATCTA

                 
       1290 TATCT
          1 TATCT

       1295 GCATCTAAAC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44


Consensus pattern (18 bp):   
TATCTAAATCTAAATCTA
Done.