Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010642.1 Corchorus capsularis cultivar CVL-1 contig10663, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30777

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--293
2
19.5
2
94
5
69
52
0
0
47
1.00
3614--3682
16
4.4
15
70
15
59
10
21
37
30
1.87
4156--4252
30
3.2
30
88
4
133
28
25
17
27
1.98
5280--5357
29
2.6
30
78
8
79
24
24
20
30
1.98
5413--5468
22
2.8
19
81
10
67
16
33
10
39
1.83
5417--5468
19
2.5
21
81
9
63
17
32
11
38
1.85
5855--5946
47
2.0
45
89
4
139
20
9
23
45
1.81
6786--6851
34
1.9
34
87
0
96
19
9
34
36
1.84
7943--8033
45
2.0
45
97
0
173
6
27
29
36
1.82
14208--14256
24
2.0
24
100
0
98
30
20
16
32
1.94
15800--15930
33
4.0
33
73
10
97
16
37
34
11
1.85
22225--22258
12
2.8
12
86
0
50
0
55
0
44
0.99
27463--28335
437
2.0
442
82
3
1073
26
12
17
43
1.85
28360--28524
89
1.9
89
88
5
237
29
9
12
48
1.73
28652--28686
16
2.1
18
89
10
56
48
0
8
42
1.33
28993--29065
29
2.8
27
70
21
75
8
42
6
42
1.61

Tables:   1

The End!