Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010643.1 Corchorus capsularis cultivar CVL-1 contig10664, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31231

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2102--2201
30
3.3
29
64
10
74
28
36
18
18
1.94
2096--2231
62
2.2
62
92
2
229
25
40
16
18
1.90
15860--15888
15
2.0
15
93
6
51
13
24
0
62
1.32
18009--18034
2
13.0
2
100
0
52
50
0
0
50
1.00
20700--20730
6
5.2
6
100
0
62
16
32
32
19
1.94
21037--21061
6
4.2
6
100
0
50
0
20
32
48
1.50
25022--25052
2
15.5
2
100
0
62
48
0
0
51
1.00
28348--28612
132
2.0
132
91
2
426
49
3
10
36
1.54
28449--28903
227
2.0
227
95
0
813
46
3
14
35
1.61
28907--28961
27
2.0
27
82
6
67
27
10
18
43
1.83
31052--31097
19
2.4
19
88
0
65
63
0
34
2
1.07

Tables:   1

The End!