genome.fa.s10645.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010645.1 Corchorus capsularis cultivar CVL-1 contig10666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17902

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2823--2848	6	4.3	6	100	0	52	15	15	0	69	1.20
3109--3376	69	3.9	69	88	3	362	29	18	28	23	1.98
3109--3362	137	1.9	137	87	5	379	28	18	28	24	1.98
3859--3957	50	2.0	50	89	0	153	36	14	16	33	1.88
4241--4299	11	5.5	11	82	13	70	3	16	0	79	0.86
4249--4301	25	2.0	25	85	14	70	1	18	0	79	0.83
4241--4303	23	2.8	22	86	9	83	3	17	0	79	0.86
5538--5576	15	2.9	14	85	14	55	20	20	0	58	1.39
5543--5587	13	3.3	13	84	15	56	20	20	0	60	1.37
5979--6129	75	2.0	76	85	1	205	31	19	11	37	1.87
8075--8105	6	5.3	6	96	3	55	51	12	0	35	1.40
9467--9496	11	2.7	11	94	0	51	40	20	0	40	1.52
10874--10914	21	2.0	21	85	9	57	43	21	9	24	1.83
12897--12955	19	2.9	21	73	21	61	35	18	3	42	1.67
12925--12956	11	2.9	11	90	0	55	43	18	0	37	1.51
12897--12956	22	2.9	22	76	19	65	36	18	3	41	1.67
14417--14446	11	2.7	11	94	0	51	40	20	0	40	1.52
16570--16627	24	2.5	24	77	8	66	53	12	18	15	1.72
17180--17221	19	2.2	19	86	0	57	19	23	4	52	1.65
17198--17422	27	8.4	28	70	18	131	20	24	1	54	1.54
17270--17311	22	1.9	22	90	0	66	14	23	0	61	1.32
17192--17407	106	2.0	106	81	13	248	19	24	1	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17344--17476	64	2.1	64	86	6	182	19	24	2	54	1.56
17371--17459	37	2.4	37	80	15	96	16	22	2	58	1.49
17407--17478	27	2.7	27	85	8	103	16	23	2	56	1.53
17414--17472	28	2.1	27	84	12	75	15	22	3	59	1.51
17434--17516	38	2.2	36	83	6	103	15	25	1	57	1.45
17537--17790	22	11.4	22	67	21	111	24	18	3	53	1.59
17635--17790	65	2.4	63	84	10	208	24	20	2	52	1.59
17829--17902	30	2.5	30	88	0	112	22	16	8	52	1.69

Tables:   1

The End!