Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010649.1 Corchorus capsularis cultivar CVL-1 contig10670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35865

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7630--7665
19
1.9
18
88
5
54
33
22
2
41
1.68
9611--9723
33
3.4
33
81
4
122
23
39
25
10
1.87
15709--15971
53
4.8
53
86
6
314
38
28
14
19
1.90
15679--15922
106
2.3
107
85
5
321
37
27
15
19
1.91
15870--15971
30
3.4
30
75
21
97
39
30
12
17
1.87
17759--17844
33
2.6
33
90
0
136
31
10
17
40
1.83
18223--18281
30
2.0
30
90
6
93
30
16
30
22
1.96
21556--21604
21
2.3
21
80
16
57
32
14
12
40
1.83
23003--23070
31
2.2
31
89
0
100
52
20
5
20
1.67
27690--27749
21
2.9
21
76
0
75
35
13
20
31
1.91
28635--28662
2
14.0
2
100
0
56
50
0
0
50
1.00
28761--28811
21
2.4
21
84
12
61
54
13
1
29
1.50
29855--29881
1
27.0
1
100
0
54
0
0
0
100
0.00
30388--30425
18
2.1
18
100
0
76
65
0
0
34
0.93
30619--30768
74
2.0
74
94
0
264
31
10
8
50
1.66
30911--31031
62
2.0
62
96
3
226
46
25
9
19
1.79
33065--33181
58
2.0
58
96
0
216
34
19
20
25
1.96
34737--34779
21
2.0
21
95
0
77
44
16
18
20
1.87

Tables:   1

The End!