Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001065.1 Corchorus capsularis cultivar CVL-1 contig01065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2521
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1542 original size:13 final size:13

Alignment explanation


    Indices: 1524--1548  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1514 CACGTGGCAA

                         
       1524 TGAAAAAAAAAAC
          1 TGAAAAAAAAAAC

                        
       1537 TGAAAAAAAAAA
          1 TGAAAAAAAAAA

       1549 TTTATTTTGA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.04, G:0.08, T:0.08


Consensus pattern (13 bp):   
TGAAAAAAAAAAC

Found at i:1559 original size:19 final size:19

Alignment explanation


    Indices: 1537--1584  Score: 53
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       1527 AAAAAAAAAC

                               *
       1537 TGAAAAAAAAAA-TTTATTT
          1 TGAAAAAAAAAATTTTA-TA

                  *  *         
       1556 TGAAAACAATAATTTTATA
          1 TGAAAAAAAAAATTTTATA

                      
       1575 TGAAAAAAAA
          1 TGAAAAAAAA

       1585 GTCTAAACCC


Statistics
Matches: 23,  Mismatches: 5, Indels: 2
        0.77            0.17        0.07

Matches are distributed among these distances:
  19   19  0.83
  20    4  0.17

ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31


Consensus pattern (19 bp):   
TGAAAAAAAAAATTTTATA
Done.