Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010651.1 Corchorus capsularis cultivar CVL-1 contig10672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36018

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6957--7028
31
2.3
29
75
15
74
26
1
12
59
1.41
7280--7335
16
3.5
16
83
9
78
42
41
10
5
1.62
7579--7605
13
2.1
13
100
0
54
55
22
0
22
1.44
10232--10276
20
2.2
20
84
4
54
66
8
8
15
1.43
16666--16813
74
2.0
74
98
0
287
39
19
20
20
1.92
16891--16936
20
2.4
19
88
3
65
69
8
8
13
1.36
21183--21222
22
1.9
19
85
14
53
35
25
25
15
1.94
21454--21554
29
3.4
28
79
9
103
17
31
15
34
1.92
21745--21824
29
2.7
30
82
3
108
35
16
31
17
1.92
23336--23363
2
14.0
2
100
0
56
50
0
0
50
1.00
30584--30660
34
2.3
34
95
0
136
28
10
10
50
1.69
30712--30778
33
2.0
33
100
0
134
26
11
8
52
1.68
30834--30876
3
14.3
3
100
0
86
32
0
0
67
0.91
32593--32706
33
3.6
30
80
10
120
40
16
10
32
1.83
34400--34433
8
4.1
8
85
7
50
23
2
14
58
1.50
35867--35980
33
3.6
30
80
10
120
40
16
10
32
1.83

Tables:   1

The End!