genome.fa.s10653.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010653.1 Corchorus capsularis cultivar CVL-1 contig10674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44272

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4347--4391	22	2.0	22	91	0	72	15	6	42	35	1.73
4517--4602	43	2.0	43	90	0	136	26	20	23	29	1.99
11620--11659	13	3.1	13	79	13	55	30	27	10	32	1.89
16372--16773	35	11.7	35	80	6	394	33	17	10	38	1.84
16372--16773	101	3.9	101	85	3	482	33	17	10	38	1.84
16611--16664	14	3.6	14	79	13	63	33	22	9	35	1.86
16372--16772	136	2.9	132	82	9	416	33	17	10	38	1.84
21399--21483	33	2.6	33	90	0	125	31	5	17	44	1.73
23102--23193	36	2.6	36	87	3	132	38	28	15	18	1.91
23199--23258	25	2.4	25	86	2	77	43	5	20	31	1.73
23271--23369	34	2.9	34	78	4	110	41	18	19	21	1.91
23340--23526	99	1.9	99	82	4	234	32	22	21	22	1.98
25717--25772	26	2.2	25	81	9	69	46	10	7	35	1.66
25859--25899	19	2.2	19	86	4	57	4	21	0	73	1.02
27899--27944	24	2.0	23	87	12	67	58	10	13	17	1.62
28953--29388	35	12.7	35	83	4	483	35	17	9	37	1.83
29171--29226	17	3.2	17	73	14	51	41	12	8	37	1.74
28953--29388	101	4.2	101	81	7	441	35	17	9	37	1.83
29227--29280	14	3.6	14	79	13	63	33	22	9	35	1.86
28953--29388	136	3.2	136	89	2	613	35	17	9	37	1.83
42604--42983	190	2.0	190	96	0	706	26	13	20	39	1.90
43645--43763	36	3.4	34	74	17	120	27	15	7	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43666--43778	32	3.4	32	74	17	113	27	17	6	48	1.71
43777--44211	35	12.4	35	84	6	503	26	22	9	42	1.83
43777--44211	71	6.2	68	83	8	507	26	22	9	42	1.83

Tables:   1

The End!