Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010654.1 Corchorus capsularis cultivar CVL-1 contig10675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27081

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--299
35
8.5
35
85
4
379
27
21
9
41
1.84
1--299
71
4.3
70
87
5
390
27
21
9
41
1.84
1--299
106
2.8
104
85
5
420
27
21
9
41
1.84
379--538
36
4.5
35
85
3
194
25
11
11
51
1.72
539--638
12
8.7
12
81
7
127
9
26
7
58
1.54
539--638
23
4.3
23
85
2
139
9
26
7
58
1.54
539--633
35
2.8
34
87
4
129
9
26
7
56
1.57
795--856
31
2.0
31
96
0
115
29
16
11
43
1.82
2663--3273
41
14.9
41
79
10
588
36
21
27
14
1.92
2871--3306
81
5.2
86
77
11
370
36
21
26
15
1.93
3240--3337
48
2.0
48
88
3
144
42
19
20
17
1.89
8988--9073
27
3.2
26
84
12
95
44
19
15
20
1.87
9317--9388
22
3.2
22
74
2
72
26
19
29
25
1.99
15419--15542
36
3.5
36
76
15
134
27
16
9
46
1.78
15556--15999
71
6.3
70
84
5
522
25
21
10
42
1.84
15556--15999
177
2.5
174
82
4
536
25
21
10
42
1.84
15556--15999
35
12.6
36
83
6
504
25
21
10
42
1.84
16073--16231
36
4.5
35
86
3
201
26
11
11
50
1.73
16073--16231
71
2.2
71
85
3
203
26
11
11
50
1.73
16232--16331
12
8.7
12
85
7
145
8
27
8
57
1.56
16232--16331
23
4.3
23
91
2
157
8
27
8
57
1.56
20016--20092
27
2.8
28
86
5
113
44
22
15
18
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22302--22384
27
3.1
27
100
0
166
33
3
28
33
1.75
26208--26315
33
3.3
32
80
8
119
11
26
40
21
1.86

Tables:   1

The End!