Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010656.1 Corchorus capsularis cultivar CVL-1 contig10677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3822
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30


Found at i:1729 original size:28 final size:29

Alignment explanation


    Indices: 1693--1766  Score: 105
    Period size: 28  Copynumber: 2.6  Consensus size: 29

       1683 GGGTCATCCA

                                         
       1693 GGGGCATTTTGGTCATTTTCACATCTA-G
          1 GGGGCATTTTGGTCATTTTCACATCTAGG

                               **   *    
       1721 GGGGCATTTTGGTCATTTTTGCATTTAGG
          1 GGGGCATTTTGGTCATTTTCACATCTAGG

                *            
       1750 GGGGTATTTTGGTCATT
          1 GGGGCATTTTGGTCATT

       1767 CTTAATCTAC


Statistics
Matches: 41,  Mismatches: 4, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  28   24  0.59
  29   17  0.41

ACGTcount: A:0.15, C:0.12, G:0.30, T:0.43


Consensus pattern (29 bp):   
GGGGCATTTTGGTCATTTTCACATCTAGG

Done.