Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010657.1 Corchorus capsularis cultivar CVL-1 contig10678, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12290

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
525--624
30
3.0
33
84
8
107
53
8
17
22
1.69
525--622
36
2.9
34
82
10
105
52
8
17
22
1.71
546--631
30
2.7
31
87
7
111
53
8
15
23
1.68
640--696
22
2.6
21
83
10
62
52
5
21
21
1.66
663--710
22
2.3
21
86
13
64
54
4
20
20
1.61
692--1052
55
6.6
55
89
0
535
50
8
16
25
1.72
1241--1316
36
2.1
36
83
7
102
51
3
25
19
1.64
1269--1360
14
6.3
14
68
14
53
55
2
21
20
1.54
1279--1395
22
5.5
22
75
9
91
57
2
21
18
1.53
1341--1565
7
33.1
7
64
19
68
55
3
24
17
1.56
1352--1454
34
3.3
33
78
17
105
54
1
26
17
1.53
1409--1501
46
2.0
47
85
2
125
54
4
23
17
1.60
1453--1536
35
2.4
35
86
5
116
58
4
20
16
1.56
1530--1554
12
2.1
12
100
0
50
52
0
32
16
1.44
1525--1561
19
1.9
19
88
0
56
51
2
27
18
1.60
3640--3675
19
1.9
18
88
5
54
41
2
22
33
1.68
11372--11416
14
3.3
13
84
9
63
44
6
11
37
1.66

Tables:   1

The End!