Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010658.1 Corchorus capsularis cultivar CVL-1 contig10679, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2328
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31


Found at i:1784 original size:29 final size:28

Alignment explanation


    Indices: 1742--1816  Score: 96
    Period size: 29  Copynumber: 2.6  Consensus size: 28

       1732 GGGTCATCCA

                                        
       1742 GGGGCATTTTGGTCATTTTCACATCTAG
          1 GGGGCATTTTGGTCATTTTCACATCTAG

                                **   *    
       1770 GGGGCAATTTTGGTCATTTTTTCATTTAGG
          1 GGGGC-ATTTTGGTCATTTTCACATCTA-G

                *            
       1800 GGGGTATTTTGGTCATT
          1 GGGGCATTTTGGTCATT

       1817 CTTAATCTAC


Statistics
Matches: 41,  Mismatches: 4, Indels: 3
        0.85            0.08        0.06

Matches are distributed among these distances:
  28    5  0.12
  29   31  0.76
  30    5  0.12

ACGTcount: A:0.16, C:0.12, G:0.28, T:0.44


Consensus pattern (28 bp):   
GGGGCATTTTGGTCATTTTCACATCTAG
Done.