Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010662.1 Corchorus capsularis cultivar CVL-1 contig10683, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11792
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30


Found at i:2844 original size:33 final size:32

Alignment explanation


    Indices: 2793--2899  Score: 135
    Period size: 33  Copynumber: 3.2  Consensus size: 32

       2783 ACTTGGAGAT

                                      *       
       2793 CCGGCCACGCGACTTGGACATGCCCGACCATC-A
          1 CCGGCCACGCGAC-TGGACATGCCCGGCCA-CAA

                     *                       
       2826 CCGGCCACGTGACATGGACATGCCCGGCCACAA
          1 CCGGCCACGCGAC-TGGACATGCCCGGCCACAA

             *               *               
       2859 CTGGCCACGCGACTCGGCCATGCCCGGCCACAA
          1 CCGGCCACGCGACT-GGACATGCCCGGCCACAA

                    
       2892 CCGGCCAC
          1 CCGGCCAC

       2900 ATGATCCTTT


Statistics
Matches: 65,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  32    2  0.03
  33   63  0.97

ACGTcount: A:0.21, C:0.44, G:0.26, T:0.09


Consensus pattern (32 bp):   
CCGGCCACGCGACTGGACATGCCCGGCCACAA
Done.