Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010667.1 Corchorus capsularis cultivar CVL-1 contig10688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12433

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
560--591
12
2.7
12
95
0
55
25
46
21
6
1.74
3075--3116
21
2.0
21
90
0
66
23
28
33
14
1.94
3096--3202
33
3.2
32
82
5
124
21
38
28
11
1.88
4166--4199
17
2.0
17
94
0
59
55
14
5
23
1.61
8173--8200
14
2.0
14
100
0
56
14
0
0
85
0.59
9144--9197
23
2.3
23
87
6
74
9
27
46
16
1.78
9172--9263
33
2.8
33
86
3
123
9
29
40
20
1.85
9243--9282
21
1.9
21
94
0
71
17
35
27
20
1.95
10347--10395
20
2.4
21
93
3
82
4
14
30
51
1.61
10427--10454
12
2.3
12
100
0
56
50
32
17
0
1.47
10705--10729
13
1.9
13
100
0
50
16
8
0
76
1.02
11333--11439
33
3.2
33
82
2
126
24
38
28
9
1.86

Tables:   1

The End!